Comparative 16S rRNA Analysis of Lake Bacterioplankton Reveals Globally Distributed Phylogenetic Clusters Including an Abundant Group of Actinobacteria

By Frank Oliver Glöckner, E. Zaichikov, N. Belkova, L. Denissova, Jakob Pernthaler, A. Pernthaler, R. Amann. Applied and Environmental Microbiology, 2000

630 citations recorded by the source corpus.

Subfields: Ecology, Molecular Biology, Pollution

View Paper: https://www.semanticscholar.org/paper/9e5cd1dd85b9792dfec1918ccb1ef4efa6da2ed3

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Citations in the corpus

DNA-based methods for monitoring invasive species: a review and prospectus (2007, methodology): “Several groups have used this approach to assess microbial biodiversity, adopting ribosomal DNA sequences (16S or 18S) as barcodes (Dorigo et al. 2002; Glockner et al. 2000; Zwart et al. 2002), but none have yet applied it to large-scale surveys of metazoan biodiversity.”
Changes in bacterial activity and community structure in response to dissolved organic matter in the Hudson River, New York (2004, background): “Actinobacteria can be another abundant group in freshwaters (Glöckner et al. 2000), although these waters are often dominated by beta-proteobacteria (Glöckner et al. 1999).”
A Guide to the Natural History of Freshwater Lake Bacteria (2011, result): “This apparent dichotomy arises in part because different research groups inventory bacterial taxa using various levels of phylogenetic or taxonomic resolution, ranging from phylum-level fluorescent in situ hybridization (FISH) probes (23, 154, 176) to more narrowly identified phylotypes defined by 1”
Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers (2002, background): “The first large group was designated ACK-4 by Hiorns et al. (1997) and hgcI by Glöckner et al. (2000).”
Molecular Evidence for a Uniform Microbial Community in Sponges from Different Oceans (2002, background): “Because monophyletic 16S rDNA sequence clusters have also been documented in seawater (23, 29, 30), freshwater lakes (15), and marine sediments (31), the presence of monophyletic lineages in sponges can be principally explained without the necessity of host contact.”
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities (2005, background): “Our analyses support the hypothesis that geography plays a minimal role in structuring bacterial communities and that bacterial types are dispersed widely in similar habitat types across the globe (11, 13, 32).”
Composition and dynamics of particle-associated and free-living bacterial communities in the Weser estuary, Germany (2003, background): “7B) of the 4 clusters proposed by Glöckner et al. (2000) which comprise the great majority of typical freshwater βProteobacteria found in limnetic and estuarine environments.”
Biogeography of Bacterioplankton in Inland Waters (2008, neutral): “The notion of globally distributed freshwater taxa (Glöckner et al., 2000; Zwart et al., 2002), as well as results from BCC estimates in 98 European lakes, also contradicts this idea (Van der Gucht et al.”
Response of bacterial and viral communities to nutrient manipulations in seawater mesocosms (2003, background): “Glöckner et al. (2000) have found actinobacteria to account for up to 63% of the bacterioplankton biomass in lake water.”
Vertical diversity of bacteria in an oxygen-stratified humic lake, evaluated using DNA and phospholipid analyses (2009, background): “%) and Proteobacteria (142 clones, 33%), of which most were Betaproteobacteria (103 clones, 23%), Actinobacteria (43 clones, 10%), Planctomycetes (35 clones, 8%), and Bacteroidetes (18 clones, 4%; Fig.”
Fluorescence In Situ Hybridization and Catalyzed Reporter Deposition for the Identification of Marine Bacteria (2002, neutral): “During the last few years numerous efforts have been made to increase the sensitivity of FISH, including the use of brighter fluorochromes (1, 19), image-intensified video microscopy (17), chloramphenicol treatment to increase the rRNA content of the growing bacterial fraction (35), hybridization wi”
Global phylogenetic community structure and β-diversity patterns in surface bacterioplankton metacommunities (2010, neutral): “Fuchskuhle 63 58 53o10'N,13o02'E 2 6 59 Peat, shallow (Glockner et al. 2000)”
Diversity of Bacteroidetes in high-altitude saline evaporitic basins in northern Chile (2009, background): “, 2003], marine waters [Kirchman, 2002], and high-altitude, cold environments [Dorador, 2007; Wu et al., 2006;Dong et al., 2006; Jiang et al., 2006; Liu et al., 2006; Demergasso et al., 2004;Glöckner et al., 2000].”