BLUP for phenotypic selection in plant breeding and variety testing

By Hans-Peter Piepho, Jens Möhring, A. Melchinger, A. Büchse. Euphytica, 2008

753 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/9ca3e3b5dcf83c7a4deebd2625f282b0b785952c

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In Genetics

In Plant Science

Citations in the corpus

Comparing the performance of cereal varieties in organic and non-organic cropping systems in different European countries (2008, methodology): “Although the REML algorithm used to estimate the variance components is numerically quite robust against missing data and some non-orthogonality (Piepho et al. 2008), we did not succeed to analyse all data (trials/traits) in the collected data sets.”
Genomic Relationship Matrix for Correcting Pedigree Errors in Breeding Populations: Impact on Genetic Parameters and Genomic Selection Accuracy (2014, methodology): “For traits with complex inheritance, breeding values (BVs) are typically estimated with best linear unbiased prediction (BLUP) and used to rank the population for selection (Piepho et al., 2008).”
Ridge Regression and Extensions for Genomewide Selection in Maize (2009, methodology): “, 2005) may be fi tted within a mixed model, if a representation in Euclidean space, or some approximation thereof, is found by principal coordinate analysis (Gower, 1966), but this is not elaborated here (Piepho et al., 2008a).”
Canola oil increases in polyunsaturated fatty acids and decreases in oleic acid in drought‐stressed Mediterranean‐type environments (2009, background): “‘Often the main focus is merely on the estimation of the whole genotypic value rather than on component genetic effects comprising the genotype, so BLUP not using the coefficient of coancestry is perfectly reasonable’ (Piepho et al. 2008).”
Perspectives for Genomic Selection Applications and Research in Plants (2015, background): “In plant breeding, the use of mixed models is more recent and not yet as widespread (Smith et al., 2005; Piepho et al., 2007).”
Genomic Selection for Crop Improvement (2017, positive): “The use of EBVs via BLUP has been popular in animal breeding and in recent years has been used by plant breeders (reviewed by Piepho et al., 2007).”
Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP (2011, methodology): “When using genomic selection to advance lines as varieties, it is not just the breeding (additive) value but the full genotypic value that is of interest (Piepho et al., 2008).”
Genomic Selection and Prediction in Plant Breeding (2011, background): “Selection in plant breeding is usually based on estimates of breeding values obtained with pedigree-based mixed models (Crossa et al. 2006; Piepho et al. 2007; Burgueño et al. 2007; Piepho 2009).”