Divergence with Gene Flow: Models and Data

By C. Pinho, J. Hey. 2010

381 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/9bcbe1d553b6dd534a2c65039a4a60c919a36eb0

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In Genetics

Citations in the corpus

Applications of next-generation sequencing to phylogeography and phylogenetics. (2013, background): “Another issue is the historical importance of utilizing gene trees in phylogeography and phylogenetics (Brito and Edwards, 2008), and the preeminence of coalescent-based analytical methods that either require, or are currently best utilized, in concert with gene trees (Kuhner, 2009; Liu et al., 2009”
Genome-wide evidence for speciation with gene flow in Heliconius butterflies (2013, methodology): “If gene flow is indeed common and persistent, then theoretical models of sympatric speciation might be very widely applicable, justifying the recent shift in emphasis (Wu 2001; Pinho and Hey 2010; Smadja and Butlin 2011; Feder et al. 2012).”
Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci (2014, methodology): “A sensitive and widely used approach to test for gene flow is to fit coalescent models using maximum-likelihood or Bayesian methods (Pinho and Hey 2010).”
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow (2014, methodology): “One popular way to infer whether gene flow is occurring is to apply a coalescent-based model for gene flow, referred to as the isolation-with-migration (IM) model (Nielsen & Wakeley 2001; Hey & Nielsen 2004, 2007; Hey 2010).”
Phylogeographic studies of plants in China: Advances in the past and directions in the future (2012, methodology): “Second, new tools have been developed and widely used to measure gene flow between diverging species (Nielsen & Wakeley, 2001; Pinho & Hey, 2010).”