Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

By Tami E. Cruickshank, Matthew W. Hahn. Molecular Ecology, 2014

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View Paper: https://www.semanticscholar.org/paper/09543aa181153c4cc98723da55abd9999121a836

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In Genetics

Citations in the corpus

The genomics of local adaptation in trees: are we out of the woods yet? (2017, background): “…regarding putative phenotypic targets of selection nor environmental drivers of differentiation, often do not correct for neutral population structure (but see Lotterhos & Whitlock 2015), and will inevitably isolate a biased set of candidate loci (Hermisson 2009; Cruickshank & Hahn 2014).”
Applications of next-generation sequencing to the study of biological invasions (2015, background): “Therefore, Cruickshank and Hahn (2014) suggest that dXY should be combined with relative measures to more fully understand heterogeneous genomic divergence.”
pixy: Unbiased estimation of nucleotide diversity and divergence in the presence of missing data (2020, background): “Similarly, d XY is a key statistic for exploring patterns of divergence between populations, particularly in the context of divergence with gene flow (Noor and Bennett 2009; Cruickshank and Hahn 2014; Burri 2017).”
Stacks 2: Analytical Methods for Paired-end Sequencing Improve RADseq-based Population Genomics (2019, methodology): “For haplotypes, several versions of F ST are calculated, including φ ST (Bird, Karl, Mouse, & Toonen, 2011; Holsinger & Weir, 2009) and F ′ ST (Meirmans, 2006), and we provide a haplotype‐level calculation of D XY (Cruickshank & Hahn, 2014; Nei, 1987).”
Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions (2016, neutral): “Thus, coding regions may show higher F ST than intergenic areas (Cruickshank and Hahn 2014) and may be enriched for genetic-environment associations (as has been observed empirically by Lasky et al. 2012) because deleterious mutations are being selected against in all environments (purifying…”