Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics

By W. Murphy, E. Eizirik, S. O'Brien, O. Madsen, M. Scally, C. Douady, E. Teeling, Oliver A. Ryder, M. Stanhope, W. D. de Jong and 1 more. Science, 2001

1,281 citations recorded by the source corpus.

Subfields: Ecology, Genetics, Paleontology

View Paper: https://www.semanticscholar.org/paper/978ad66a32635bdd6864e0b2830aba74a0a6df88

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Citations in the corpus

Historical biogeography, ecology and species richness. (2004, background): “Similarly, many taxon-oriented phylogenetic studies address the biogeographical implications of their results [14, 15 ].”
Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. (2003, background): “Empirically, Bayesian posterior probabilities for clades in phylogenetic trees are usually found to be considerably higher than corresponding nonparametric bootstrap frequencies (e.g., Karol et al., 2001; Murphy et al., 2001; Leaché and Reeder, 2002; Whittingham et al., 2002).”
The origin and evolution of model organisms (2002, background): “Despite the availability of more DNA and protein sequence data, this understanding did not change until recently, when sequence analyses, using a modest number of sites but an expanded number of species, indicated that rodents and rabbits are the closest relatives, with artiodactyls being the most d”
Combining Phylogenetic and Hidden Markov Models in Biosequence Analysis (2003, neutral): “of the artiodactyls and carnivores [31, 36].”
Clades, Clocks, and Continents: Historical and Biogeographical Analysis of Myrtaceae, Vochysiaceae, and Relatives in the Southern Hemisphere (2004, background): “…in the early Cretaceous has provided a strong vicariance focal point (Cracraft 1988) for explaining present-day disjunct patterns in early mammals (Murphy et al. 2001), passerine birds (Edwards and Boles 2002), flightless ratites (Haddrath and Baker 2001), Araucaria beetles (Sequeira and Farrell…”
Taxonomic aspects of Peronosporaceae inferred from Bayesian molecular phylogenetics (2003, background): “Phytophthora Another phylogenetic result of Riethmüller et al. (2002) was the close relationship of Peronophythora litchii and Phytophthora arecae.”
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes (2008, background): “Marsupials included in our study represent all extant orders (sensu Wilson and Reeder 2005); placental taxon sampling included representatives of the four major clades (i.e., Afrotheria, Euarchontoglires, Laurasiatheria, and Xenarthra; Murphy et al. 2001) (Table 1).”
PALEOBIOGEOGRAPHY: The Relevance of Fossils to Biogeography (2003, neutral): “Murray (2001), working with cichlid fishes, provides another intriguing study of vertebrate paleobiogeography that used a phylogenetic approach.”
A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data. (2004, background): “Murphy et al. (2001), for example, analyzed an alignment of 22 genes comprising 16.4 kb of DNA to infer the mammalian phylogeny.”
Molecular systematics of armadillos (Xenarthra, Dasypodidae): contribution of maximum likelihood and Bayesian analyses of mitochondrial and nuclear genes. (2003, positive): “Also, molecular surveys have emphasized Xenarthra’s fundamental importance for understanding the origins of placental mammals, by showing that it is among the oldest placental groups with living representatives (Madsen et al., 2001; Murphy et al., 2001a,b; Delsuc et al., 2002).”
Immunology of placentation in eutherian mammals (2006, background): “All extant eutherian mammals can be grouped into four superorders (or clades): Afrotheria, Xenarthra, Laurasiatheria and Euarchontoglires (or Supraprimates”