Recent progress and future directions in protein-protein docking.

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Protein–protein docking by fast generalized Fourier transforms on 5D rotational manifolds (2016, neutral): “Thus, it is desirable to develop computational docking methods that, starting from the coordinates of two unbound component molecules deﬁned as receptor and ligand, respectively, are capable of providing a model of acceptable accuracy for the bound receptor-ligand complex [1, 2, 3, 4].”
Docking, scoring, and affinity prediction in CAPRI (2013, background): “…of the individual components, the so-called “docking” algorithms, and the associated energetic criteria for singling out stable binding modes.4, 16–18 The community-wide initiative on the Critical Assessment of Predicted Interactions (CAPRI), established in 2001, has played a central role in…”
Probing Native Protein Structures by Chemical Cross-linking, Mass Spectrometry, and Bioinformatics (2010, methodology): “A recent review of protein-protein docking methodologies is provided by Ritchie (50).”