Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

By Ludovic Antoine Alexandre Orlando, Aurelien Ginolhac, Guojie Zhang, D. Froese, Anders Albrechtsen, M. Stiller, Mikkel Schubert, E. Cappellini, Bent Petersen, Ida Moltke and 46 more. Nature, 2013

809 citations recorded by the source corpus.

Subfields: Genetics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/8f53f1743218c7775d8151a6db39131275aa17c6

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Citations in the corpus

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing (2017, neutral): “A range of technologies have been explored in the aDNA context, including the Roche/454 series [4–6], SOLID-4 [7], the now discontinued Helicos [8, 9], and the Ion Torrent series [10].”
Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX (2014, methodology): “Here we present the flexible and open-source pipeline called PALEOMIX, combining all associated tools that were developed while characterizing the Middle Pleistocene horse draft genome 22 .”
ANGSD: Analysis of Next Generation Sequencing Data (2014, background): “Another approach that tries to estimate the real error rate and not the mismatch rate is based on an outgroup [20,24] and a high quality individual.”
Pathways to de‐extinction: how close can we get to resurrection of an extinct species? (2017, background): “Cold preservation remains an important criterion for long-term DNA preservation; the oldest specimen from which a genome has been sequenced is a 700 000-year-old horse bone found in frozen soil in the Canadian Arctic (Orlando et al. 2013).”
The Genome 10K Project: A Way Forward (2015, neutral): “Passerine birds (5756, 127) Parrots (367, 5) Falcons (64, 2) Seriemas (2, 1) Kingfisher and allies (152, 9) Woodpeckers (406, 8) Hornbills (62, 2) Trogons (44, 1) Cuckoo roller (1, 1) Mousebirds (5, 1) Owls (213, 2) Hawks, eagles, vultures (249, 4) Pelicans, frigatebirds, cormorants (174, 4) Petrels”
Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments (2013, methodology): “Given the extraordinary age of the fossil (>300,000 ka), cytosine deamination is expected to have converted a large proportion of terminal cytosines to uracils (4, 8).”