Codon usage tabulated from international DNA sequence databases: status for the year 2000

By Yasukazu Nakamura, T. Gojobori, Toshimichi Ikemura. Nucleic Acids Res., 2000

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CAIcal: A combined set of tools to assess codon usage adaptation (2008, methodology): “The reference set required to calculate the CAI can be introduced in a variety of formats, including that of the Codon Usage Database [14].”
Novel Type V Staphylococcal Cassette Chromosome mec Driven by a Novel Cassette Chromosome Recombinase, ccrC (2004, methodology): “Codon usage was tabulated from international DNA sequence databases (sequence status for the year 2000) ( 29 ).”
Gaucher disease: mutation and polymorphism spectrum in the glucocerebrosidase gene (GBA) (2008, background): “jp/codon) [Nakamura et al., 2000], the resulting mRNA is inefficiently translated.”
Optimized cassettes for fluorescent protein tagging in Saccharomyces cerevisiae (2004, methodology): “Construction of optimized tagging vectors All primers used are described in Table 1.”
Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use (2016, background): “Independent of utilization for frameshifting, AAA is used ∼3 times more commonly than AAG except when the 3 adjacent base is C when AAG is preferred (507) .”
Gene Designer: a synthetic biology tool for constructing artificial DNA segments (2006, neutral): “jp/codon[20] or manually edited as required.”