Evaluation of Genetic Diversity in Rice Subspecies Using Microsatellite Markers

By J. Ni, P. Colowit, D. Mackill. 2002

377 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/868a21e76bcc225d72bda296e7fb35dcbb57355c

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In Genetics

In Plant Science

Citations in the corpus

A Rice Diversity Panel Evaluated for Genetic and Agro‐Morphological Diversity between Subpopulations and its Geographic Distribution (2011, background): “Simple sequence repeat markers have been extensively used in genetic diversity and population structure studies in many plants including rice (Ni et al., 2002; Garris et al., 2005; Lu et al., 2005; Eizenga et al., 2006; Thomson et al., 2007).”
Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa (2007, background): “A majority of the world’s rice is produced from inbred (pure line) varieties and historically inbred variety development has focused almost exclusively on crosses between members of the same sub-population (indica‐indica) or between related sub-populations (i.e., tropical japonica · temperate japoni”
Development and Characterization of Microsatellite Markers for the Grain Amaranths (2008, methodology): “Microsatellites have been extremely useful in determining taxonomic relationships among closely related individuals and assessing diversity within a species ( Ni et al., 2002; Fukunaga et al., 2005; Ellwood et al., 2006).”
Suitability of mapped sequence tagged microsatellite site markers for establishing distinctness, uniformity and stability in aromatic rice (2004, methodology): “In rice, STMS markers have been utilized for many purposes including genome mapping, gene tagging, estimation of genetic diversity, varietal differentiation and purity testing (McCouch et al., 1997; Olufowote et al., 1997; Bligh et al., 1999; 2000; Coburn et al., 2002; Ni et al., 2002).”
Association mapping of yield and its components in rice cultivars (2007, background): “The genetic structure of rice has previously been documented (Glaszmann 1987; Parsons et al. 1999; Ni et al. 2002; Garris et al. 2005) but this analysis uses accessions recently introduced into the USA that have blast resistance (Eizenga et al.”
Population structure and breeding patterns of 145 U.S. rice cultivars based on SSR marker analysis (2005, background): “This suggests that the McCouch, 2000; Ishii et al., 2001) and domestic U.S. population structure in U.S. rice was established before 1930 and re- (Mackill, 1995; Cao and Oard, 1997; Ni et al., 2002) colmains essentially intact today, despite a large amount of controlled lections.”
Assessment of Genetic Diversity of Philippine Rice Cultivars Carrying Good Quality Traits using SSR Markers (2007, background): “These results were consistent with those reported by Cho et al. (2000) and Ni et al. (2002).”
Molecular diversity and genome-wide linkage disequilibrium patterns in a worldwide collection of Oryza sativa and its wild relatives (2008, background): “2007) and domestic US (Ni et al. 2002; Lu et al. 2005) collections.”
Genetic diversity associated with agronomic traits using microsatellite markers in Pakistani rice landraces (2010, background): “…et al. 2004; Siwach et al. 2004; Ghneim Herrera et al. 2008); (iii) identification and purity testing of varieties (Coburn et al. 2002; Nagaraju et al. 2002; Singh et al. 2004; Joshi and Behera 2006) and (iv) determination of the genetic relationship between several sub-species (Ni et al. 2002).”