A molecular phylogeny of Phytophthora and related oomycetes.

By D. Cooke, A. Drenth, J. Duncan, G. Wagels, C. Brasier. Fungal Genetics and Biology, 2000

1,100 citations recorded by the source corpus.

Subfields: Cell Biology, Oceanography, Plant Science

View Paper: https://www.semanticscholar.org/paper/85da5fa4e85902d713d6ce3f525b88174a2d7f0d

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Citations in the corpus

Markers, old and new, for examining Phytophthora infestans diversity (2004, methodology): “Recognized as a powerful method for reconstructing phylogenetic relationships between species (Cooke et al., 2000), sequence analysis is increasingly being applied to the reconstruction of gene genealogies or phylogeography within fungal species (Koufopanou et al.”
Containment and spot eradication of a highly destructive, invasive plant pathogen (Phytophthora cinnamomi) in natural ecosystems (2010, methodology): “8S-ITS2) of the ribosomal DNA was amplified using primers ITS-6 (Cooke et al. 2000) and ITS-4 (White et al. 1990).”
Phylogeny of Hyaloperonospora based on nuclear ribosomal internal transcribed spacer sequences (2004, methodology): “Suitability of ITS for clarifying infrageneric relationships has been demonstrated by FÖRSTER, CUMMINGS & COFFEY (2000) and COOKE et al. (2000) for Phytophthora, MATSUMOTO et al. (1999) for Pythium, and VOGLMAYR (2003) for Peronospora.”
Multiple alien Phytophthora taxa discovered on diseased ornamental plants in Spain (2009, background): “Based on phylogenetic analyses, it falls in subclade 7b sensu Cooke et al. (2000), which remarkably only includes hostspecific pathogens of crops such as P.”
One stop shop: backbones trees for important phytopathogenic genera: I (2014) (2014, background): “The first molecular phylogenies of Pythium were inferred from sequences of the 28S, ITS, and cox2 regions respectively, and although each analysis included only a few species, the observed variation merited speculation regarding the polyphyletic nature of Pythium at least for the ITS and 28S phyloge”
Development and application of a PCR‐based ‘molecular tool box’ for the identification of Phytophthora species damaging forests and natural ecosystems (2007, background): “The highly polymorphic nature of these introns was essential to differentiate closely related species which have almost identical ITS regions (Cooke et al., 2000; Kroon et al., 2004).”
Widespread Phytophthora infestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases (2016, methodology): “…the technologies and databases became available, confirmation of identifications was made using polymerase chain reaction (PCR) to amplify ITS-rDNA, followed by sequencing and comparison against sequences in databases such as GenBank and PhytophthoraDB (e.g. Cooke et al. 2000; Cullen et al. 2001).”
Sudden Oak Death and Associated Diseases Caused by Phytophthora ramorum (2003, background): “ramorum is unique at the ITS region and can be distinguished from all other known Phytophthora species (2,19,24).”
Kauri (Agathis australis) under threat from Phytophthora (2009, background): “…phylogenetic tree of Clade 5 based on ITS sequences of selected Phytophthora strains obtained in this study (ICMP cultures using species names as supplied by depositors), along with representative GenBank sequences used by Cooke et al. (2000) (underlined), and gametangia of reprentative strains.”
Phytophthora pinifolia sp. nov. associated with a serious needle disease of Pinus radiata in Chile (2008, methodology): “The ITS sequences were incorporated in a DNA sequence dataset that represents the diversity of the genus Phytophthora, produced by Cooke et al. (2000) and obtained from TreeBASE (www.treebase.org; Matrix #M751).”
Fishing for Phytophthora from Western Australia’s waterways: a distribution and diversity survey (2013, methodology): “…Clade 6 species, such as P. inundata, P. taxon D. Hüberli (*) :G. E. S. J. Hardy :D. White :N. Williams : T. I. Burgess Centre for Phytophthora Science and Management, School of Biological Sciences and Biotechnology, Murdoch University, South Street, Murdoch, WA 6150, Australia e-mail:…”