Field guide to next‐generation DNA sequencers

By Travis C. Glenn. Molecular Ecology Resources, 2011

1,165 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/85803b9b3bd04b34f70549904996841a75133098

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Citations in the corpus

The sequence of sequencers: The history of sequencing DNA (2016, methodology): “This technology allows for very rapid sequencing during the actual detection phase [67], although as with 454 (and all other pyrosequencing technologies) it is less able to readily interpret homopolymer sequences due to the loss of signal as multiple matching dNTPs incorporate [70].”
How will the ‘molecular revolution’ contribute to biological recording? (2015, background): “The throughput of next generation sequencers has increased a million fold since the turn of the century, while costs have plummeted (e.g. Glenn, 2011).”
A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents (2013, background): “On the other hand, frameshifts may be caused by sequencing errors that are frequent with the 454 platform [48].”
SNP Discovery through Next-Generation Sequencing and Its Applications (2012, neutral): “[26].”
Towards a unified paradigm for sequence‐based identification of fungi (2013, background): “The demand for high-quality reference sequences has risen rapidly due to the increasing use of high-throughput sequencing technologies (such as 454 pyrosequencing, Illumina and Ion Torrent; Glenn 2011; Shokralla et al. 2012; Bates et al. 2013).”
Next‐generation sequencing technologies for environmental DNA research (2012, background): “Although available NGS technologies utilize quite diverse chemistry and base incorporation ⁄ detection tools, they share two main steps: library fragmentation ⁄ amplicon library preparation and detection of the incorporated nucleotides (Glenn 2011; Zhang et al. 2011).”
Applications of next-generation sequencing to phylogeography and phylogenetics. (2013, background): “There are several existing reviews of different NGS sequencing platforms and chemistries (Shendure and Ji, 2008; Glenn, 2011), so we discuss platform-specific details sparingly.”
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome (2012, methodology): “With the introduction of the new generation of ‘benchtop sequencers’ [8] such as the Illumina MiSeq and the Roche GS Junior, sequence-based comparative omic studies will continue to increase in scale, and are rapidly becoming accessible to small research laboratories, clinical laboratories, and educ”
Who is eating what: diet assessment using next generation sequencing (2012, background): “More complete description of the features and biases of the different NGS platforms can be found elsewhere (Glenn 2011).”
Performance comparison of benchtop high-throughput sequencing platforms (2012, background): “5 Unless stated, pricing information is from the online supplement of [3].”