Genomic studies of uncultivated archaea

By C. Schleper, G. Jurgens, M. Jonuscheit. Nature Reviews Microbiology, 2005

627 citations recorded by the source corpus.

Subfields: Ecology, Environmental Chemistry, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/83f848b6bef038f19d3f3075d0a7b0b55c5e51ee

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Citations in the corpus

A review of soil NO transformation: associated processes and possible physiological significance on organisms (2015, background): “Apparently, archaea were more active 455 compared to bacteria under extreme conditions, such as ammonium-poor 456 environments (Di et al., 2009), low pH (Nicol et al., 2008; Lehtovirta-457 Morley et al., 2011) and temperature stress (Schleper et al., 2005; Valentine, 458 2007).”
Community structure of marine bacterioplankton: patterns, networks, and relationships to function (2008, positive): “The result was confirmed by more conclusive data, most notably the sequence of a large-insert metagenomic clone from soil that included a crenarchaeal 16S rRNA gene, the ammonia monooxygenase (amoA) gene, plus some other related genes like nitrite reductase (Schleper et al. 2005).”
Production of oceanic nitrous oxide by ammonia-oxidizing archaea (2012, neutral): “, 2005 ; Schleper et al .”
Current insights into the autotrophic thaumarchaeal ammonia oxidation in acidic soils (2012, background): “…findings have demonstrated the broad distributions of archaea in diverse moderate environments, they are still mainly considered as extremophiles, well-adapted to thrive in some unfavorable habitats, such as high-temperature, salt-saturated and strongly acidic environments (Schleper et al., 2005).”
Autotrophic carbon fixation in archaea (2010, background): “Such data might also tell us whether the distributions of the pathways outlined in this Review can be generalized, and findings from metagenomic approaches should allow to deduce the distribution of a particular pathway in natur”
Microbial Diversity in Caves (2016, background): “Schleper et al. (2005) have suggested that low-temperature Crenarcheotamay be capable of oxidizing ammonium.”
Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome (2008, methodology): “39 [22] (bacteria), the SILVA SSURef database release 89 [21] (eukaryotes and archaea), and sequences from the dataset described in [38] (archaea).”
Microbial Communities of Deep Marine Subsurface Sediments: Molecular and Cultivation Surveys (2006, background): “Genomic surveys can identify the physiological and metabolic potential of uncultured subsurface populations (Schleper et al. 2005).”
Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. (2009, background): “Crenarchaeota represent a substantial part of the total prokaryotic community in upland soil based on 16S rRNA gene analysis (Ochsenreiter et al., 2003; Schleper et al., 2005; Kemnitz et al., 2007) and high-throughput DNA pyrosequencing (Roesch et al., 2007).”
Pathways of Carbon Assimilation and Ammonia Oxidation Suggested by Environmental Genomic Analyses of Marine Crenarchaeota (2006, background): “Comparison of the genetic neighborhood surrounding the amo gene cluster in C. symbiosum with the terrestrial soil clone (AJ627422) revealed little conservation of genes adjacent to the amoA and amoB loci (Figure 4A).”
Examining the global distribution of dominant archaeal populations in soil (2011, background): “…of novel archaeal lineages, the development of new functional markers and probes, the cultivation of over 50 different archaeal strains, and the sequencing of several archaeal genomes, including that of an ammonia-oxidizing group 1 archaeon (see Schleper et al., 2005; Walker et al., 2010).”