RASMOL: biomolecular graphics for all.

By Roger A. Sayle, E. Milner-White. 1995

Subfields: Computational Biology & Bioinformatics

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Citations in the corpus

Molecular Docking and Structure-Based Drug Design Strategies (2015, neutral): “Program UCSF Chimera [193,194] VMD [195,196] Pymol [197,198] BALL [199,200] RasMol [201,202] Jmol [203] JSmol [204]”
The Pfam protein families database (2011, background): “Web users can view structures marked up according to domain boundaries with Rasmol or RasWin ( 7 ).”
Relibase: design and development of a database for comprehensive analysis of protein-ligand interactions. (2003, methodology): “The Figure was generated using Rasmol.(18) 618 Design and Development of Relibase”
PROTEIN STRUCTURE PREDICTION CENTER IN CASP8 (2009, background): “The 3D interactive representations of target structures (lower left-hand side corner of the “information cell”) may be viewed with Rasmol [9].”
MEROPS: the database of proteolytic enzymes, their substrates and inhibitors (2013, methodology): “The image on the left-hand side is a rendered Richardson image generated using the programs RasMol (22), Molscript (23) and Render (24).”
CASTp: Computed Atlas of Surface Topography of proteins (2003, background): “These include the following files: summary information of pockets and voids, summary information of mouth openings of pockets, atomic delineation of pocket walls, atomic delineation of mouth rims and a RasMol (18) and a kinemage (11) visualization script.”
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models (2004, unknown): “Protein models can be displayed directly from within the web browser using any molecular viewer application, e.g. DeepView (25), Dino (http://www.dino3d.org), or Rasmol (34).”
Design of an HA2-based Escherichia coli expressed influenza immunogen that protects mice from pathogenic challenge (2010, methodology): “This figure was derived from the X-ray structure of HA from the (H3N2) isolate A/HK/68 (PDB ID code 1HGD) (7) andwas drawn using the program Rasmol (41).”
PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids (2004, methodology): “As before, a detailed analysis of the secondary structure motifs is provided, via PROMOTIF (10), and any valid PROSITE patterns (11) contained within the sequence are mapped to the 3D structure (12) via RasMol.”
TRAF Family Proteins Link PKR with NF-κB Activation (2004, methodology): “mol (55), and Swiss PDBViewer molecular visualization programs were used to”
The Pfam protein families database (2004, background): “Web users can view structures marked up according to domain boundaries with Rasmol or RasWin (7).”
SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone (2012, methodology): “Beta strand annotation is done on a structure-by-structure basis, where the beta-strand residue pairing is determined using the same algorithm implemented by the Rasmol (Sayle and Milner-White, 1995) visualization program.”