The Buccaneer software for automated model building
By Kevin Cowtan. 2006
530 citations recorded by the source corpus.
View Paper: https://www.semanticscholar.org/paper/77d617e180973884e1780d4b6eed0eff123aacc3
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- Pavel V. Afonine
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Citations in the corpus
- Structure of Respiratory Syncytial Virus Fusion Glycoprotein in the Postfusion Conformation Reveals Preservation of Neutralizing Epitopes (2011, unknown): “automatic model building by BUCCANEER (14).”
- phenix.mr_rosetta: molecular replacement and model rebuilding with Phenix and Rosetta (2012, methodology): “Improvements in model-building algorithms include the use of iteration between model-building, refinement and map calculation or density modification [17, 18, 19] and the development of methods that can be used at resolutions lower than 3 A˚ [20, 21, 22, 23, 24, 25, 26, 27].”
- Increasing the Radius of Convergence of Molecular Replacement by Density and Energy Guided Protein Structure Optimization (2011, unknown): “This occurred in blind cases where either there was point-group symmetry in the template(s) (6 in Table 1),point-group symmetry was found duringthe Phasersearch (13), or tight crystal contacts formed point-group symmetry (8 and 10).”
- Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank (2011, background): “ARP/wARP (Langer et al., 2008), Resolve (Terwilliger, 2003), Buccaneer (Cowtan, 2006) and others, but the final steps in model building and refinement are typically left to the user.”
- Unexpected Receptor Functional Mimicry Elucidates Activation of Coronavirus Fusion (2020, unknown): “The coordinates were subsequently improved and completed using Buccaneer (Cowtan, 2006) and COOT (Brown et al.”