MIPS: a database for genomes and protein sequences.

By Hans-Werner Mewes, D. Frishman, U. Güldener, G. Mannhaupt, K. Mayer, M. Mokrejš, B. Morgenstern, M. Münsterkötter, S. Rudd, B. Weil. Nucleic Acids Research, 2002

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Citations in the corpus

Socket: a program for identifying and analysing coiled-coil motifs within protein structures. (2001, background): “The coiled coil is a ubiquitous protein-folding motif (Lupas, 1996); current estimates indicate that approximately 5-10 % of the sequences emerging from the various genome projects encode coiledcoil regions (Walshaw & Woolfson, unpublished data; (Mewes et al., 2000)).”
What is Bioinformatics? A Proposed Definition and Overview of the Field (2001, background): “Further genomic scale data that we can consider in large-scale surveys include the subcellular localisations of proteins and their interactions with each other [114-116].”
Protein interaction networks from yeast to human. (2004, background): “[9–12]) and increasingly becoming warehouses for large-scale assay data, while novel databases continue to be developed [13].”
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes (2004, background): “gether, more than 80% of the yeast proteins in the paneukaryotic, single-member KOGs belong to known macromolecular complexes included in the MIPS database [67], as compared to around 64% for all yeast proteins in the KOGs, which is a moderate but statistically highly significant excess (data not sh”
Correlated sequence-signatures as markers of protein-protein interaction. (2001, background): “(1) The Munich Information Center for Protein Sequences, Germany: MIPS.(43) This is a database of genomic data that includes information about various organisms.”
Functional Knowledge Transfer for High-accuracy Prediction of Under-studied Biological Processes (2013, methodology): “Physical and genetic interaction data from BioGRID [70], IntAct [71], Mint [72], and MIPS [73] were processed as counts of experimental assays that support an interaction between two genes (e.”
Relating whole-genome expression data with protein-protein interactions. (2002, background): “In particular, functional assignment of uncharacterized genes can take place through transferring the annotation from a characterized gene (gathered from databases such as the catalog of the Munich Information Center for Protein Sequences (MIPS) or Gene Ontology (Ashburner et al. 2000; Mewes et al. ”
Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks. (2002, methodology): “Using the MIPS database (Mewes et al., 1999), we asked whether the Yap1p- and Yap2p-dependent genes were enriched for particular functions.”
Identification of functional modules using network topology and high-throughput data (2007, unknown): “…used four annotation databases: (a) GO "biological process" ontology (level 7; 474 categories) [29]; (b) GO complexes annotation (subterms of "protein complex" term, 213 com-BMC plexes); (c) MIPS deletion phenotype annotations [30] (181 phenotypes); (d) KEGG molecular pathways (310 pathways) [14].”