Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean.

By C. A. Francis, K. Roberts, J. Michael Beman, A. Santoro, B. Oakley. Proceedings of the National Academy of Sciences of the United States of America, 2005

2,358 citations recorded by the source corpus.

Subfields: Ecology, Molecular Biology, Pollution

View Paper: https://www.semanticscholar.org/paper/73b5351d4fd1daf7500f4115d52a0b44eac581ec

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In Ecology

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Citations in the corpus

• New perspectives in benthic deep-sea microbial ecology (2015, background): “Different studies have suggested that chemoautotrophic processes that involve aerobic ammonia oxidation in marine ecosystems are mainly due to archaeal rather than bacterial assemblages ( Francis et al .”
• Nitrous oxide emissions from grazed grassland as affected by a nitrification inhibitor, dicyandiamide, and relationships with ammonia-oxidizing bacteria and archaea (2010, methodology): “Subsamples were taken 1, 7, 21, 49, and 92 days after the application of the treatments and were analyzed for AOB and AOA populations using realtime polymerase chain reaction with primers targeting the AOB and AOA amoA gene (Rotthauwe et al. 1997; Francis et al. 2005; Leininger et al. 2006).”
• Nitrification in Marine Systems (2008, neutral): “, 2005), shown to be both ubiquitous (Francis et al., 2005; Leininger et al., 2006) and abundant (Wuchter et al.”
• Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes (2006, background): “Some of these soil archaea may prove to have unexpected physiologies (42), and they appear to be culturable (99).”
• Characterization of incubation experiments and development of an enrichment culture capable of ammonium oxidation under iron-reducing conditions (2014, methodology): “, 1997) for AOB-amoA and Arch amoA-F/amoA-R for AOAamoA (Francis et al., 2005), respectively.”
• Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. (2009, background): “The isolation of ammoniaoxidizing archaea from marine aquarium water (Konneke et al., 2005) and hot springs (Hatzenpichler et al., 2008; de la Torre et al., 2008), the widespread occurrence of the archaeal type of the amoA gene ( Francis et al., 2005; Leininger et al., 2006; Wuchter et al., 2006; L”
• Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic’s interior (2010, background): “Based on the abundance of the archaeal amoA gene, a subunit of one of the key enzymes in ammonia oxidation, recent studies suggest that mesophilic Crenarchaea play a major role in ammonia oxidation in the pelagic ocean (Francis et al., 2005).”
• Standing stocks and activity of Archaea and Bacteria in the western Arctic Ocean (2007, background): “These results support previous studies that suggest that marine Crenarchaeota are chemoautotrophic (Ingalls et al. 2006) and are ammonium-oxidizers (Francis et al. 2005; Konneke et al. 2005).”
• Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils (2009, background): “Ammonia-oxidizing archaea are present in large numbers in the ocea”