Bootstrapping Phylogenetic Trees: Theory and Methods

By Susan P. Holmes. 2003

163 citations recorded by the source corpus.

Subfields: Artificial Intelligence, Genetics, Geometry and Topology

View Paper: https://www.semanticscholar.org/paper/72a95cbc69c0d8b063519655b33170d107d89c2d

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Artificial Intelligence

1. John P. Huelsenbeck
2. Justin Bleich
3. Fredrik Ronquist
4. Richard A. Berk
5. M. Wojciechowski
6. L. Bohs
7. G. Saunders
8. Alexei J. Drummond

In Genetics

1. John P. Huelsenbeck
2. Fredrik Ronquist
3. Justin Bleich
4. Richard A. Berk
5. C. Thacker
6. F. G. Marx
7. M. Heidemaa
8. J. Pramuk

In Geometry and Topology

1. Justin Bleich
2. John P. Huelsenbeck
3. Fredrik Ronquist
4. Richard A. Berk

Citations in the corpus

• Bayesian Analysis of Molecular Evolution Using MrBayes (2005, background): “The following transition probability matrices show the effect of increasing branch length: P(0.00) = 1.000 0.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 0.000 1.000 P(0.01) = 0.991 0.002 0.006 0.001 0.003 0.993 0.001 0.003 0.013 0.002 0.985 0.001 0.003 0.009 0.001…”
• Forecasts of Violence to Inform Sentencing Decisions (2013, background): “Holmes (2003) provides an excellent review for phylogenetic applications that has broader implications.”
• How Many Bootstrap Replicates Are Necessary? (2009, unknown): “However, they are difficult to apply to phylogenetic BS due to the significantly higher computational and theoretical complexity of the estimator (Holmes, 2003).”