Bayesian Analysis of Molecular Evolution Using MrBayes

By John P. Huelsenbeck, Fredrik Ronquist. 2005

307 citations recorded by the source corpus.

Subfields: Artificial Intelligence, Genetics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/ebc3a278d1f292cf69b9fbe247b230b61bfb4138

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Artificial Intelligence

1. Prashant P. Sharma
2. A. Lörz
3. A. Silva
4. John D. Taylor
5. M. Mutanen
6. C. Sands
7. N. Wahlberg
8. I. Kitching

In Genetics

1. Michael Palczewski
2. I. Kitching
3. D. Lafontaine
4. C. Schmidt
5. Prashant P. Sharma
6. A. Lörz
7. A. Silva
8. John D. Taylor

In Molecular Biology

1. N. Wahlberg
2. John D. Taylor
3. E. Glover
4. Prashant P. Sharma
5. Daniel L. Graf
6. R. Bieler
7. D. Lafontaine
8. C. Schmidt

Citations in the corpus

• The evolutionary and biogeographic history of the armoured harvestmen – Laniatores phylogeny based on ten molecular markers, with the description of two new families of Opiliones (Arachnida) (2011, methodology): “2 (Huelsenbeck and Ronquist 2005) with a unique GTR model of sequence evolution with corrections for a discrete gamma distribution and a proportion of invariant sites (GTR+G + I) specified for each partition, as selected in Modeltest ver.”
• Is the Scotia Sea a centre of Antarctic marine diversification? Some evidence of cryptic speciation in the circum-Antarctic bivalve Lissarca notorcadensis (Arcoidea: Philobryidae) (2007, methodology): “Bayesian phylogenetic reconstruction was conducted using Mr Bayes v3.1.2 ( Ronquist and Huelsenbeck 2003, 2005 ).”
• Relationships among the basal lineages of Noctuidae (Lepidoptera, Noctuoidea) based on eight gene regions (2013, background): “1 (Huelsenbeck & Ronquist, 2005) on the freely available Bioportal server (http://www.bioportal. uio.no).”
• A new species of day gecko from high elevation in Sri Lanka, with a preliminary phylogeny of Sri Lankan Cnemaspis (Reptilia, Squamata, Gekkonidae) (2007, methodology): “Partitioned Bayesian analyses were conducted with MrBayes 3.1.1 (Huelsenbeck & Ronquist, 2005; Ronquist & Huelsenbeck, 2003) with default priors.”
• Unified Framework to Evaluate Panmixia and Migration Direction Among Multiple Sampling Locations (2010, background): “In any study, the number of models depends on the number of populations and increases at a superexponential rate, so it is unlikely to evaluate all possible models, in contrast to mutation models, all of which are able to be evaluated (Huelsenbeck and Ronquist 2005).”
• Investigating the Bivalve Tree of Life – an exemplar-based approach combining molecular and novel morphological characters (2014, methodology): “The morphological data matrix was further analysed in combination with molecular sequence data under parsimony in POY and under Bayesian inference in MrBayes v. 3.1.2 (Huelsenbeck and Ronquist 2005), where the morphological data partition was assigned a discrete equalrates model (Lewis 2001).”