Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty.

By J. Parker, Andrew Rambaut, Oliver George Pybus. Infection, Genetics and Evolution, 2008

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Urbanization and Disease Emergence: Dynamics at the Wildlife–Livestock–Human Interface (2017, methodology): “[102] developed a Bayesian Markov-Chain Monte Carlo approach for testing whether closely related taxa are more likely to share a trait of interest.”
Bayesian Phylogeography Finds Its Roots (2009, result): “Similar to [10], we report the posterior distributions Pr dAI jX, Y ð Þ and the AI compares these”
Molecular Evolution of Zika Virus during Its Emergence in the 20th Century (2014, unknown): “0 [59] after 10000 null replications.”