Transition Path Theory for Markov Jump Processes

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A Markov Jump Process for More Efficient Hamiltonian Monte Carlo (2015, background): “Work has also been done on efficient sampling of trajectories in Markov jump processes [5] and the statistical properties of these trajectories [6].”
Markov models of molecular kinetics: generation and validation. (2011, unknown): “the ensemble of protein folding pathways [22, 50].”
Identification of slow molecular order parameters for Markov model construction. (2013, background): “From this propagator, many properties can be calculated, such as transition pathways between two sets of configurations [51, 7, 67].”
An Introduction to Markov State Models and Their Application to Long Timescale Molecular Simulation (2014, background): “They can be both experimentally accessed via relaxation or correlation functions that are measurable with various spectroscopic techniques [2, 5, 20, 28], but can also be directly calculated from the Markov model eigenvalues as implied timescales, Eq.”