Comparative genomics of the eukaryotes.

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A new method to detect related function among proteins independent of sequence and fold homology. (2002, background): “by nodes (a [ A and b [ B) and edges (d(ai ;a j) and d(bk ;b l)) that describe two cavities A and B, a new graph G can be defined according to the following protocol: ( 1 ) construct pairs between nodes taken from A and B, in such a way that the nodes (ai and bk) correspond to the same property, i.e”
Evolution of the Integrin α and β Protein Families (2001, background): “Integrins are adhesion receptors involved in cell‐cell and cell‐matrix interactions in animals (Bosman 1993; Gumbiner 1996; Piggott and Power 1993; Sonnenberg 1993).”
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. (2005, background): “Secondary structure in noncoding HCEs Because several known mechanisms for post-transcriptional regulation involve stem-loop (and other) structures in UTRs ( Ross 1996; Mignone et al. 2002), strong conservation in UTRs may occur partly as a result of structural constraints.”