Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps

By Caroline Belser, B. Istace, E. Denis, Marion Dubarry, F. Baurens, C. Falentin, Mathieu Genete, Wahiba Berrabah, A. Chèvre, R. Delourme and 16 more. Nature Plants, 2018

330 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/6d609eed08bd55048618ae23982cf60daa613290

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

1. Mile Sikic
2. Robert Vaser
3. Heng Li
4. Yunhao Wang
5. Yue Zhao
6. Yuru Wang
7. Audrey E. Bollas
8. Kin Fai Au

In Plant Science

1. Yunhao Wang
2. Jue Ruan
3. Heng Li
4. Kin Fai Au

Citations in the corpus

• Nanopore sequencing technology, bioinformatics and applications (2021, background): “…genome assembly of all sizes of genomes, from bacteria of several megabases 109 , fruit fly 139,156 , fish 143,144,157 , blood clam 158 , banana 159 , cabbage 159 and walnut 160,161 , all of whose genomes are in the hundreds of megabases, as well as the Komodo dragon 146 , Steller sea lion 162…”
• Fast and accurate long-read assembly with wtdbg2 (2019, methodology): “On a Musa schizocarpa (banana) ONT dataset sequenced to 45-fold coverage 15 , wtdbg2 delivers a 507 Mb assembly with 1.0 Mb N50.”
• Time- and memory-efficient genome assembly with Raven (2021, methodology): “An evaluation on older sequencing datasets is presented in Supplementary Table 2, while Raven’s performance on plant genomes from two scientific studies 19,20 is described in Supplementary Table 3.”