Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

By Philipp J. Keller, Annette D. Schmidt, Joachim Wittbrodt, E. Stelzer. Science, 2008

1,514 citations recorded by the source corpus.

Subfields: Biophysics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/6b37b398b21109535e6b16b8d3e60a4e310a1890

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In Biophysics

In Molecular Biology

Citations in the corpus

BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples (2018, background): “Using light-sheet microscopy [4-6], these samples can be imaged with subcellular resolution in their entirety within a few hours [7].”
Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination (2011, methodology): “Although this has been successful for imaging large multicellular organisms at single-cell resolutio”
Microscopy with self-reconstructing beams (2010, methodology): “or in a line-scanning configuration by using a laterally scanned Gaussian bea”
Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy (2012, methodology): “The speedup allowed us to process nuclear positions and (4)”
Tracking in cell and developmental biology. (2009, background): “every cell-cell interaction in an entire developing organism, as well as the phenotypical characteristics and behaviors of adult organisms, pose enormous challenges in terms of both image acquisition and image analysis [86–89].”
Wide-field high-resolution 3D microscopy with Fourier ptychographic diffraction tomography (2019, neutral): “Us1n(xT ) =  Usn(xT ) = Un (xT )− 1 Born approximation ln (Un(xT )) = ln (Usn(xT ) + 1) Rytov approximation (5)”
Selective plane illumination microscopy techniques in developmental biology (2009, methodology): “…of such an analysis is the recent study of the early embryonic development of the zebrafish, in which 1.5 billion pixels per minute were acquired and automated image segmentation and cell tracking were performed on large computer clusters to describe hypoblast formation (Keller et al., 2008).”
Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data (2014, background): “Such mistakes do not propagate indefinitely, as the pipeline is capable of self-correction ( Supplementary Fig.”
Forces in tissue morphogenesis and patterning. (2013, positive): “In recent years, considerable progress has been made in the development of image acquisition tools to record dynamic changes in cell and tissue shapes at high spatial and temporal resolution and in the development of image analysis tools to quantify cell/tissue dynamics (Montero et al., 2005; Kwon e”