The CPTAC Data Portal: A Resource for Cancer Proteomics Research.
By N. Edwards, Mauricio Oberti, Ratna R. Thangudu, S. Cai, Peter B. McGarvey, Shine Jacob, Subha Madhavan, K. Ketchum. Journal of Proteome Research, 2015
491 citations recorded by the source corpus.
Subfields: Cancer Research, Molecular Biology, Spectroscopy
View Paper: https://www.semanticscholar.org/paper/6afd8058db5cbbc03341a8df11866b4d5755c038
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Cancer Research
- Matthew Meyerson
- Gad Getz
- M. Lawrence
- A. Gimenez-Roqueplo
- W. Marston Linehan
- D. Hoon
- Christopher Sander
- Peter W. Laird
In Molecular Biology
- Tunca Dogan
- UniProt Consortium
- Wanding Zhou
- Hui Shen
- Burkhard Rost
- Peter W. Laird
- Alex Bateman
- Elaine R. Mardis
In Spectroscopy
- Tunca Dogan
- Alex Bateman
- Juan Antonio Vizcaíno
- Cathy H. Wu
- Hongzhan Huang
- Oliver Kohlbacher
- Rodrigo Lopez
- Christopher Sander
Citations in the corpus
- The PRIDE database and related tools and resources in 2019: improving support for quantification data (2018, background): “…PX resources mentioned above, there are additional proteomics databases and resources available providing protein expression information, most notably the Global Proteome Machine Database (GPMDB) (18), the CPTAC (Clinical Proteomic Tumor Analysis Consortium) data portal (19) and ProteomicsDB (20).”
- Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources (2020, methodology): “These repositories include The Cancer Genome Atlas [31], the Cancer Cell Line Encyclopedia (CCLE) [32], the Therapeutically Applicable Research to Generate Effective Treatments Data Matrix [33], the Clinical Proteomic Tumor Analysis Consortium [34], and the NCI-60 Human Tumor Cell Line Screen (NCI-6”
- Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients (2018, methodology): “Proteomics data for TCGA breast and ovarian cancer samples were downloaded from the CPTAC data portal (Edwards et al., 2015).”
- UniProt: the universal protein knowledgebase in 2021 (2020, background): “…and visualizes unique and non-unique peptides identified by mass spectrometry proteomic data deposited through the ProteomeXchange Consortium (31) (e.g. PeptideAtlas (32), MassIVE (33) and jPOST (34)) and other large-scale initiatives (CPTAC (35), ProteomicsDB (36), MaxQB (37), ETD and CTDP (38)).”