Application of Information Technology: A Statistical Approach to Scanning the Biomedical Literature for Pharmacogenetics Knowledge

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Natural Language Processing for EHR-Based Computational Phenotyping (2018, background): “Computational phenotyping applications have been developed to mine pharmacogenomics knowledge [56-59].”
Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text (2009, methodology): “Articles processed by our modified Text-presso (Pharmspresso) are selected to be relevant to pharmacogenomics based on previously reported tools [1,10].”
PharmGKB: The Pharmacogenomics Knowledge Base (2013, methodology): “We conduct research into natural language processing (NLP) and ways in which to appropriately aggregate all pharmacogenetics and pharmacogenomics articles in Pubmed [12] but there is still a necessity for human curation to ensure quality data [13].”
Biomedical ontologies: a functional perspective (2007, background): “Originally conceived to help librarians carry out literature search, the standard names provided by MeSH have proven useful for augmenting natural language processing methods for text processing, extraction and classification [21–24].”