GRIMM: genome rearrangements web server

By Glenn Tesler. Bioinform., 2002

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Genome Rearrangement Distances and Gene Order Phylogeny in γ-Proteobacteria (2005, methodology): “Problems associated with these methods are the diversity in the shape and number of chromosomes, the variable number of genes, or the HGT problem (Blanchette, Kunisawa, and Sankoff 1999; Moret et al. 2001; Bourque and Pevzner 2002; Tesler 2002; Tang and Moret 2003b).”
Perfect sorting by reversals is not always difficult (2006, unknown): “For eukaryotic genomes, several evolution scenarios have been recently proposed between vertebrates genomes [10], [11], [32], using the MGR and GRIMM softwares [9], [39].”
Complete plastid genome sequence of Vaccinium macrocarpon: structure, gene content, and rearrangements revealed by next generation sequencing (2013, methodology): “The number of rearrangements was calculated using GRIMM web server (Tesler 2002).”
Plastid genome sequencing, comparative genomics, and phylogenomics: Current status and prospects (2010, methodology): “edu/m̃oret/GRAPPA/) and GRIMM (Tesler, 2002) for genome rearrangements, as well as PipMaker (Schwartz et al.”