Relating protein motion to catalysis.
By S. Hammes‐Schiffer, S. Benkovic. 2006
576 citations recorded by the source corpus.
Subfields: Atomic and Molecular Physics, and Optics, Cell Biology, Molecular Biology
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In Atomic and Molecular Physics, and Optics
- Raphael J. L. Townshend
- D. Thirumalai
- Bowen Jing
- Stephan Eismann
- Ron O. Dror
- Vladimir N Uversky
- Patricia Suriana
In Cell Biology
In Molecular Biology
- Stephan Eismann
- Zhenxing Liu
- Jie Chen
- Ron O. Dror
- Raphael J. L. Townshend
- D. Thirumalai
- Jean-Pierre Eckmann
- Tsvi Tlusty
Citations in the corpus
- Learning from Protein Structure with Geometric Vector Perceptrons (2020, background): “On the other hand, proteins also possess relational structure in terms of their amino-acid sequence and the residue-residue interactions that mediate the aforementioned protein properties (Hammes-Schiffer & Benkovic, 2006).”
- Green function of correlated genes in a minimal mechanical model of protein evolution (2018, background): “One can calculate the change in fitness by evaluating the effect of a mutation on the Green function, G′ = G + δG, and then examining the change, δF = vTδGf [3].”
- A decade and a half of protein intrinsic disorder: Biology still waits for physics (2013, background): “[186] [187] [188] [189] [190] Often, dynamic changes in the enzyme during the catalytic reaction can be described using the induced-fit model, where a conversion of one tight conformational ensemble (free enzyme) to another distinct ensemble (bound enzyme) takes place through a series of local subst”
- On the accuracy of inferring energetic coupling between distant sites in protein families from evolutionary imprints: Illustrations using lattice model (2009, background): “(9)], of PDZ on perturbation at residue i for mode 13.”
- Zinc-Binding Cysteines: Diverse Functions and Structural Motifs (2014, background): “Figure adapted from Hammes-Schiffer and Benkovic [26]; (c) The active site of FTase contains a Zn (purple) coordinated to Asp297 (orange), Cys299 (red), His362 (blue) and the thiol-containing target peptide (yellow) adjacent to the farnesyl diphosphate (cyan) (PDB ID: 1JCQ); (d) The cysteine of the ”