EMAN2: an extensible image processing suite for electron microscopy.

By Guang Tang, Liwei Peng, Philip Baldwin, D. S. Mann, Wen Jiang, Ian Rees, Steven J. Ludtke. 2007

3,082 citations recorded by the source corpus.

Subfields: Materials Chemistry, Structural Biology, Surfaces, Coatings and Films

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Materials Chemistry

1. Sjors H. W. Scheres
2. Po-Ssu Huang
3. N. Grigorieff
4. Kai Zhang
5. David Baker
6. W. Sheffler
7. Dari Kimanius
8. Erik Lindahl

In Structural Biology

1. Sjors H. W. Scheres
2. Kai Zhang
3. Dari Kimanius
4. Takanori Nakane
5. Erik Lindahl
6. Yifan Cheng
7. Björn Forsberg
8. N. Grigorieff

In Surfaces, Coatings and Films

1. Sjors H. W. Scheres
2. Kai Zhang
3. Yifan Cheng
4. Dari Kimanius
5. Takanori Nakane
6. G. Murshudov
7. Erik Lindahl
8. I. S. Fernández

Citations in the corpus

• New tools for automated high-resolution cryo-EM structure determination in RELION-3 (2018, methodology): “In the mean time, also general-purpose programs that already existed, like EMAN2 ( Tang et al., 2007 ), Frealign ( Gri-gorieff, 2007 ) or IMAGIC ( van Heel et al., 1996 ), were further improved and used for high-resolution structure determination.”
• Gctf: Real-time CTF determination and correction (2015, methodology): “CTF parameters from the text log file can also be easily extracted and used for other programs such as EMAN (Ludtke et al., 1999), Spider (Shaikh et al., 2008) and Xmipp (Sorzano et al., 2004) et al. The diagnosis file is similar to that of that of CTFFIND3 but contains additional user defined optio”
• RELION: Implementation of a Bayesian approach to cryo-EM structure determination (2012, methodology): “, 2009) and EMAN2 (Tang et al., 2007) are currently ongoing (personal communication with Bridget Carragher and Steven Ludtke, respectively).”
• Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes (2016, methodology): “py program of EMAN2 (Tang et al., 2007) or with semi-automated particle picking implemented in RELION 1.”
• Complete subunit architecture of the proteasome regulatory particle (2012, positive): “Three-dimensional maps were calculated using libraries from the EMAN2 and SPARX software package”
• Measuring the optimal exposure for single particle cryo-EM using a 2.6 Å reconstruction of rotavirus VP6 (2015, methodology): “py from the EMAN2 package (Tang et al., 2007) to generate an initial model.”