The BioCyc collection of microbial genomes and metabolic pathways

By Peter D. Karp, Richard Billington, Ron Caspi, Carol A. Fulcher, Mario Latendresse, Anamika Kothari, I. Keseler, Markus Krummenacker, Peter E. Midford, Quang Ong and 3 more. Briefings Bioinform., 2019

850 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/47aeb5d0ea8a391a8cd2ce211467b8390c323597

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

1. Markus Krummenacker
2. Peter D. Karp
3. Ron Caspi
4. Suzanne M. Paley
5. I. Keseler
6. Madeline A. Crosby
7. Lei Kong
8. Norbert Perrimon

Citations in the corpus

• FlyBase: updates to the Drosophila melanogaster knowledge base (2020, background): “The ‘Pathways’ section of a Gene Report also includes a ‘Metabolic Pathways’ subsection and has linkouts to other metabolic pathway resources––BioCyc (7), KEGG (8) and Reactome (9).”
• The MetaCyc database of metabolic pathways and enzymes - a 2019 update (2019, methodology): “In past papers in the database issue of Nucleic Acids Research we described the MetaCyc database together with the BioCyc PGDB collection (6).”
• KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis (2021, methodology): “In total, 5944 species were annotated with KEGG pathways, 41 species with PANTHER pathways, 14 species with Reactome pathways, 18 species with BioCyc pathways and 71 species with GO annotations (Table 1, Figure 3).”