Extensive feature detection of N-terminal protein sorting signals

By Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano. Bioinform., 2002

744 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/627606c7cb7e6720e581d3d742b71a03cb4f4ee5

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In Molecular Biology

Citations in the corpus

The Vegetative Vacuole Proteome of Arabidopsis thaliana Reveals Predicted and Unexpected Proteinsw⃞ (2004, background): “www.cbs.dtu.dk/services/TargetP/) (Nielsen et al., 1997; Emanuelsson et al., 2000; Bannai et al., 2002 ).”
ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST (2004, methodology): “Since 1991,numerousmethodshavebeendevelopedtopredictsubcellular localization and are available online (PSORT I (5) and PSORT-B (6) for prokaryotic organisms, iPSORT ( 7 ) and TargetP (8) for eukaryotes, and SubLoc (2) and NNPSL (3) for both prokaryotes and eukaryotes).”
PSORT-B: improving protein subcellular localization prediction for Gram-negative bacteria (2003, methodology): “Since 1991, several automated subcellular localization predictors have been developed and made available online, including: PSORT (PSORT I) for prokaryotic organisms (3), PSORT II (4), iPSORT (5) and TargetP (6) for eukaryotic organisms, and NNPSL (7) and SubLoc (8) for both organism classes.”
MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction (2009, background): “They are based either on the detection of sequence-coded sorting signals like N-terminal targeting peptides [3-11] and nuclear localization signals (NLS) [11] or use the fact that the amino acid composition of a protein is correlated with its localization [12].”
Molecular cloning of an aldehyde dehydrogenase implicated in artemisinin biosynthesis in Artemisia annuaThis paper is one of a selection of papers published in a Special Issue from the National Research Council of Canada – Plant Biotechnology Institute. (2009, methodology): “Analysis of the amino-acid sequence using iPSORT (Bannai et al. 2002) did not identify N-terminal signal or N-terminal organelle targeting information.”
ARAMEMNON, a Novel Database for Arabidopsis Integral Membrane Proteins1 (2003, background): “…structures of more than 160 TM proteins or domains were determined at varying resolution, and it appears that modularity is a general feature of polytopic membrane proteins (http://www.rcsb.org/pdb/; http://www.ncbi.nlm. nih.gov:80/Structure/; Berman et al., 2002; Wang et al., 2002).”
A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants. (2007, background): “…al., ª 2007 The Authors Journal compilation ª 2007 Blackwell Publishing Ltd, The Plant Journal, (2007), 51, 1126–1136 2006), PSORT (Nakai and Kanehisa, 1991), iPSORT (Bannai et al., 2002), TargetP.1 (Emanuelsson et al., 2000), MitoProt II (Claros and Vicens, 1996) and Predotar (Small et al., 2004).”