Applications of single nucleotide polymorphisms in crop genetics.

By A. Rafalski. Current opinion in plant biology, 2002

1,082 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/5ffcb89a76271e4f45a594a96b84dceb69792837

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Citations in the corpus

SNP Discovery via Genomic Reduction, Barcoding, and 454‐Pyrosequencing in Amaranth (2009, background): “Since SNPs are fundamental changes at the DNA level, their mapping could potentially identify causal mutations (Rafalski, 2002).”
Genomic Selection in Plant Breeding (2011, background): “SNPs have become the marker of choice for crop genetics and breeding applications because of their high abundance in genomes, and the availability of a wide array of genotyping platforms with various multiplex capabilities for SNP analysis (Rafalski, 2002).”
Breeding crops for reduced-tillage management in the intensive, rice–wheat systems of South Asia (2006, background): “Recently, Hayashi et al. (2005) developed PCR-based SNP for rice blast resistance genes at the Piz locus, and stressed the utility of SNP and small insertion/deletion polymorphisms (InDels) as DNA markers for genetic analysis and breeding of rice.”
An overview of molecular marker methods for plants (2006, methodology): “Over the past years, a large number of different SNP genotyping methods and chemistries have been developed based on various methods of allelic discrimination and detection platforms (see Rafalski, 2002b; Vignal et al., 2002; Sobrino et al., 2005; Tost and Gut, 2005 for detailed review).”
Mapping of quantitative trait loci controlling adaptive traits in coastal Douglas-fir. IV. Cold-hardiness QTL verification and candidate gene mapping (2005, methodology): “Though there are alternative approaches to conducting association studies ( Rafalski 2002 ), the most efficient and cost-effective approach in forest trees is the candidate gene method (Neale and Savolainen 2004).”
Marker assisted selection in crop plants (2005, neutral): “In LD mapping, a whole genome may be scanned to identify regions that are associated with a particular phenotype, or alleles at a few selected candidate genes may be tested for association with a phenotype (Rafalski, 2002).”
Natural phenological variation in aspen (Populus tremula): the SwAsp collection (2008, positive): “The data collected and described here provide the foundations for a far-reaching project with the aim of analyzing natural variation in adaptive traits, elucidating the structure and dynamics of Swedish aspen populations and identifying the genes controlling these important traits using association ”
Assessment of the Genetic Diversity in Forest Tree Populations Using Molecular Markers (2014, neutral): “a SNPs) [27,28] and variations thereof [29,30].”
Applied Genetics and Genomics in Alfalfa Breeding (2012, background): “SNP markers are highly abundant [58] and a large number of SNP have been identified within and between two highly divergent genotypes using transcriptome sequencing [59].”
Searching for quantitative trait loci controlling root traits in maize: a critical appraisal (2003, background): “…unrelated germplasm accessions (Meuwissen and Goddard, 2000), particularly in view of the application of new highthroughput technological platforms (e.g., single nucleotide polymorphisms: SNPs; Bhattramakki et al., 2002; Rafalski, 2002) which allow for a very detailed DNA profiling (Jaccoud, 2000).”
Marker-assisted selection: an approach for precision plant breeding in the twenty-first century (2008, background): “SNPs within candidate genes could be extremely useful for ‘association mapping’ and ultimately MAS (Rafalski 2002; Flint-Garcia et al. 2003a; Gupta et al. 2005; Breseghello & Sorrells 2006).”
DNA marker technologies and their applications in aquaculture genetics. (2004, background): “As this review focuses on DNA markers and their applications in aquaculture, and our point of view could be biased by our research experience, readers are referred to other reviews concerning application of DNA marker technologies (Rafalski and Tingey, 1993; Buitkamp and Epplen, 1996; Dodgson et al.”
Analysis of gene-derived SNP marker polymorphism in US wheat (Triticum aestivum L.) cultivars (2008, background): “Though SNPs are generally biallelic and thus often less informative than multi-allelic simple sequence repeats (SSRs), their sheer abundance makes possible the development of high density SNP genetic maps, providing the foundation for subsequent population-based genetic analysis (Rafalski 2002).”
Structure of linkage disequilibrium in plants. (2003, background): “This approach of finding bottlenecked populations could work well in high diversity/low LD species such as maize, where Rafalski (45) suggested that elite germplasm with its high levels of LD would be ideal for low-resolution association approaches.”