gimlet: a computer program for analysing genetic individual identification data

By Nathaniel Valière. 2002

913 citations recorded by the source corpus.

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In Genetics

Citations in the corpus

Estimating population size by genotyping remotely plucked hair: the Eurasian badger (2004, methodology): “). (iii) In the manual of the program  ( Valiere 2002 ), D. Chessel suggests using the equation y = a ‐ a(1 − (1/a))”
Ageing and environmental factors affect PCR success in wolf (Canis lupus) excremental DNA samples (2007, methodology): “3 (Valière 2001), with the threshold method (an allele was retained if it was observed at least two times).”
Mitigating Scoring Errors in Microsatellite Data from Wild Populations (2006, methodology): “gimlet (Valière 2002) and excel microsatellite toolkit (Park 2001), check for identical genotypes, and can be used to estimate error rates from reanalysed quality-assurance samples.”
Highways block gene flow and cause a rapid decline in genetic diversity of desert bighorn sheep (2005, background): “( Valiere 2002 ), at the number of loci matching between a pair of different DNA extractions (which could be any number of loci less than the maximum of 14 employed in this study).”
Empirical evaluation of non‐invasive capture–mark–recapture estimation of population size based on a single sampling session (2007, methodology): “The Bayesian estimate (BM) is from Petit & Valibre (2006). The maximum likelihood estimates (ECM and TIRM) are from Miller, Joyce & Waits (2005).”
Kin-related spatial structure in brown bears Ursus arctos (2005, methodology): “We calculated basic genetic data (allelic frequencies; observed and expected heterozygosities and probabilities of identities) using the software Gimlet (Valière 2002).”
Importance of a pilot study for non-invasive genetic sampling: genotyping errors and population size estimation in red deer (2006, methodology): “3.4 (Valière 2002a).”
Modeling connectivity of black bears in a desert sky island archipelago (2011, methodology): “The program GIMLET (Valiere, 2002) was used to generate a consensus multilocus genotype for each sample and to identify matching multilocus genotypes among samples.”
Restoring a keystone predator may endanger a prey species in a human‐altered ecosystem: the return of the snow leopard to Sagarmatha National Park (2009, methodology): “Biological samples with identical multilocus genotypes were identified using Gimlet v.3.1 (Valiëre, 2002).”
Comparison of noninvasive genetic and camera-trapping techniques for surveying snow leopards (2011, methodology): “Three proposed formulas, originally described by Kohn et al. (Kohn—1999), Eggert et al. (Eggert—2003), and D. Chessel (Chessel—Valière 2002), can be used for calculating the rarefaction curve; all were implemented in GIMLET 1.3.1 (Valière 2002).”
Estimating Population Size of Elusive Animals with DNA from Hunter‐Collected Feces: Four Methods for Brown Bears (2005, methodology): “We analyzed data with the software package GIMLET (Valière 2002), with 1000 random iterations of the genotype sampling order and rarefaction curves obtained from those iterations were plotted using R software (version 1.7.1; available at http://www.r-project.org).”
The role of genotypic diversity in determining grassland community structure under constant environmental conditions (2007, methodology): “Rarefaction analysis using the accumulation curve of Holdridge et al. (1971), implemented in the program GIMLET (Valière 2002), confirmed that for © 2007 The Authors Journal compilation © 2007 British Ecological Society, Journal of Ecology 95, 895–907 F. ovina, K. macrantha and Carex caryophyllea,…”