Biological Crystallography

By E. Nowak, A. Brzuszkiewicz, G. Rosenbaum

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Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix (2019, methodology): “The Polygon tool combines six diverse measures (average ADP, r.m.s.d. bonds and angles, clashscore, Rwork and Rfree) to visualize the refinement outcome in radial, one-dimensional histograms (Urzhumtseva et al., 2009).”
Towards automated crystallographic structure refinement with phenix.refine (2012, methodology): “D68, 352–367 Afonine et al. phenix.refine 361 Figure 4 Polygon images (Urzhumtseva et al., 2009) before (left) and after (right) re-refinement in phenix.refine for structures 1eic, 1g2y, 2elg and 2ppn.”
Crystal structure of a soluble cleaved HIV-1 envelope trimer (2013, background): “Slightly higher crystallographic R-values for the trimer structure compared to the mean reported for other structures to the same resolution (72) likely results from the relatively poor diffraction properties of the crystals and the anisotropy of the resulting data.”