Structure

By Norges Handelshøyskole. 2004

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Citations in the corpus

Towards automated crystallographic structure refinement with phenix.refine (2012, neutral): “…al. , 2007), 1yi5 (Bourne et al. , 2005), 2wjx (Clayton et al. , 2009), 3eob (Li et al. , 2009), 1av1 (Brouillette & Ananthara-maiah, 1995), 3bbw (Qiu et al. , 2008) and 2i07 (Janssen et al. , 2006) were selected because their published R factors are much higher than expected (Urzhumtseva et al.…”
Overview of the CCP4 suite and current developments (2011, neutral): “In addition to the automated procedures of Buccaneer and RAPPER described above, there are many model-building tools in Coot (Emsley et al. , 2010).”
Phaser crystallographic software (2007, neutral): “For macro-molecular structures, these direct-methods relationships are weaker than effects exploited by density modiﬁcation methods (reviewed by Kleywegt & Read, 1997); the presence of solvent means that the molecular transform is over-sampled, and if there is noncrystallographic symmetry then…”
Simultaneous optimization of biomolecular energy function on features from small molecules and macromolecules (2016, neutral): “The target optimization function (F total ), which is functional of energy function E( Θ ), used took the form: [2] The first two terms evaluate the energy function against small molecule thermodynamic data, while the remainders are guided by high-resolution protein structural data.”
BALBES: a molecular-replacement pipeline (2007, neutral): “These approaches have already produced several highly automated and very popular software packages for automatic model building and reﬁnement ( ARP / wARP ; Perrakis et al. , 1999) and for automatic phasing and model building [ SOLVE / RESOLVE (Terwilliger & Berendzen, 1999), CRANK (Ness et al. , 20”
Direct incorporation of experimental phase information in model refinement. (2004, unknown): “For both test cases, the anomalous substructure was determined , re®ned and phased automatically using the CRANK suite (Ness et al., 2004).”
Adversarial Diffusion Distillation (2023, unknown): “Diffusion models (DMs) [20, 63, 65] have taken a central role in the ﬁeld of generative modeling and have recently enabled remarkable advances in high-quality image-[3, 53, 54] and video-[4, 12, 21] synthesis.”
A general method for phasing novel complex RNA crystal structures without heavy-atom derivatives (2008, unknown): “…of Crystallography Printed in Singapore – all rights reserved The crystallographic phase problem [Muirhead & Perutz (1963), Nature (London), 199, 633–638] remains the single major impediment to obtaining a three-dimensional structure of a macromolecule once suitable crystals have been obtained.”
Studies on anticancer activities of antimicrobial peptides. (2008, unknown): “However, recent studies indicate that monomeric melittin has little effect on a membrane mimetic bilayer structure whereas a dimeric form of melittin causes destabilization of membrane mimetic bilayers formed from dioleoylphosphatidylcholine [139].”
FEM: feature-enhanced map (2014, unknown): “This approach is also the basis of kick maps (Gunčar et al., 2000; Turk, 2013).”