Where did the BLOSUM62 alignment score matrix come from?
By Sean R. Eddy. Nature Biotechnology, 2004
367 citations recorded by the source corpus.
Subfields: Ecology, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/59de592f3d7a83a85d86d6e6df299612bfbd5313
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Ecology
- Søren Kaae Sønderby
- Casper Kaae Sønderby
- Morten Nielsen
- Henrik Nielsen
- alexander rosenberg johansen
- Ole Winther
- Andrzej Zielezinski
- Jonas S. Almeida
In Molecular Biology
- Ole Winther
- Henrik Nielsen
- Vanessa Isabell Jurtz
- Andrzej Zielezinski
- W. Karłowski
- Jonas S. Almeida
- Susana Vinga
- Casper Kaae Sønderby
Citations in the corpus
- An introduction to deep learning on biological sequence data: examples and solutions (2017, methodology): “Another possibility is to use the BLOSUM matrix (Eddy, 2004) for encoding, representing each amino acid by its corresponding row in the BLOSUM matrix.”
- Alignment-free sequence comparison: benefits, applications, and tools (2017, background): “For instance, two randomly related DNA/RNA sequences can show up to 50% sequence identity when gaps are allowed, and the edge of the twilight zone can encompass nucleotide matches of up to 60 – 65% [16 – 18].”