Jonas S. Almeida
Molecular Biology · 2003–2017
A researcher in the Science corpus: 4 papers; trusts 22 researchers and is trusted by 23 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 49 citations into it; #2,066 of 17,773 by trust here, #11,019 by citations
- Artificial Intelligence — 12 citations into it
- Computational Biology & Bioinformatics — 12 citations into it
- Genetics — 12 citations into it; #1,054 of 6,854 by trust here, #4,743 by citations
- Ecology — 9 citations into it
- Plant Science — 8 citations into it
Whom Jonas S. Almeida trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Muthu Dayalan
- Michael C. Schatz
- Ronald C. Taylor
- Susana Vinga
- Temple F. Smith
- Stephen F. Altschul
- Terence P. Speed
- Xin Chen
- Ming Li
- Eric E. Schadt
Who trusts Jonas S. Almeida overall
- Nicolas J.-B. Brunel
- I-Chun Chou
- Sepp Hochreiter
- Todd J. Treangen
- Hulin Wu
- Andrzej Zielezinski
- Gregory E. Sims
- Julian Catchen
- Susana Vinga
- Brian D. Ondov
Papers from Jonas S. Almeida's perspective
Ordered by how strongly the researchers Jonas S. Almeida trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- Identification of common molecular subsequences.
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
- The Pfam protein families database
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
- Aligning multiple genomic sequences with the threaded blockset aligner. (Genome Research)
- MapReduce: simplified data processing on large clusters
- Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms (Nature Biotechnology)
- Assembling large genomes with single-molecule sequencing and locality-sensitive hashing (Nature Biotechnology)
Their papers
- Alignment-free sequence comparison-a review (2003) — 851 citations
- Decoupling dynamical systems for pathway identification from metabolic profiles (2004) — 321 citations
- Alignment-free sequence comparison: benefits, applications, and tools (2017) — 489 citations
- Fractal MapReduce decomposition of sequence alignment (2012) — 1,256 citations