Pajek - Analysis and Visualization of Large Networks

By V. Batagelj, Andrej Mrvar. Graph Drawing Software, 2004

986 citations recorded by the source corpus.

Subfields: Statistical and Nonlinear Physics

View Paper: https://www.semanticscholar.org/paper/58be3ebb2c2684eaf15b072b10d250edef55fa84

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In Statistical and Nonlinear Physics

Citations in the corpus

Analysis of Biological Networks (2008, methodology): “Another idea for centrality was presented by Phillip Bonacich [4].”
R&D collaboration networks in the European framework programmes: data processing, network construction and selected results (2008, methodology): “Figure 7 displays a network map, which has been created with Pajek (Batagelj and Mrvar 2003), a powerful freeware programme for the descriptive analysis and visualisation of large networks.”
Clustering and Community Detection in Directed Networks: A Survey (2013, background): “Figure 13: Schematic representation of a blockmodeling example [98].”
Exploring the diversity of complex metabolic networks (2005, positive): “In order to study the cluster organization of the predicted pathways and identify the 'hubs', i.e. highly connected metabolites in the networks, we used cluster analysis and visualization (Batagelj and Mrvar, 2002; Jeong et al., 2000).”
Introducing the bipartite Package: Analysing Ecological Networks (2008, methodology): “Others can be calculated using the freeware Pajek (http://vlado. fmf.uni-lj.si/pub/networks/pajek/: Batagelj and Mrvar, 2003).”
A correlation network approach to metabolic data analysis for tomato fruits (2008, methodology): “All networks were constructed using the Pajek graph drawing software ( Batagelj and Mrvar 2003, URL: http://vlado.fmf.uni-lj.si/pub/networks/pajek/), but we emphasize that we only used this package to fine tune the visual layout of the vertices (metabolites) and edges (correlations) that represent ”
FANMOD: a tool for fast network motif detection (2006, methodology): “Some works also mentionPAJEK (Batagelj and Mrvar, 2003) in this context, a multi-functional tool for network analysis.”
Indices, Graphs and Null Models: Analyzing Bipartite Ecological Networks (2009, methodology): “Ecosim (Gotelli and Entsminger 2001) allows the calculation of biogeographic indices (such as C-score and V-ratio), while Pajek (Batagelj and Mrvar 2003) is a software for food web analysis and visualization.”
Disaggregation of remotely sensed land surface temperature: Literature survey, taxonomy, issues, and caveats (2013, methodology): “4, plotted using Pajek (Batagelj & Mrvar, 2003) with the literature given in Table 2.”
Validity Issues in the Use of Social Network Analysis with Digital Trace Data (2011, neutral): “, 2002), Pajek (Batagelj et al., 2003), the SNA package for R (Butts, n.”
prefuse: a toolkit for interactive information visualization (2005, background): “There are several other research and commercial graph drawing systems, including Marshall et al. ’s Graph Visualization Framework (GVF) [35], the University of Ljubljana’s Pajek [3], and products from Tom Sawyer and yWorks.”
VANTED: A system for advanced data analysis and visualization in the context of biological networks (2006, methodology): “As alternatives to network creation, networks may be loaded with the built-in importer from the KEGG Pathway database [6], or from the standard file formats GML [25], SBML [26], and Pajek .net [ 28].”