Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA

By A. Chariton, L. Court, D. Hartley, M. Colloff, C. Hardy. 2010

191 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/53c41e047b897d11ae0812347fc4c73289f7fcec

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In Ecology

In Molecular Biology

Citations in the corpus

The ecologist's field guide to sequence‐based identification of biodiversity (2016, background): “Metabarcoding of community DNA was first applied to marine sediments to describe meiofauna (Chariton et al. 2010; Creer et al. 2010) and subsequently to freshwater (Hajibabaei et al.”
Towards next‐generation biodiversity assessment using DNA metabarcoding (2012, background): “Species identification from bulk samples of entire organisms (e.g. Chariton et al. 2010; Creer et al. 2010; Porazinska et al. 2010; Hajibabaei et al. 2011), where the organisms are isolated prior to analysis, can also be considered as DNA metabarcoding.”
Environmental DNA (2012, background): “2010), ecogenomics (Chariton et al. 2010), environmental barcoding (Hajibabaei et al.”
obitools: a unix‐inspired software package for DNA metabarcoding (2016, background): “…by microbiologists (e.g. Sogin et al. 2006), it is now widely used for plants (e.g. Sønstebø et al. 2010; Parducci et al. 2012; Yoccoz et al. 2012) and animals from meiofauna (e.g. Chariton et al. 2010; Baldwin et al. 2013) to larger organisms (e.g. Andersen et al. 2012; Thomsen et al. 2012).”
Worldwide Analysis of Sedimentary DNA Reveals Major Gaps in Taxonomic Knowledge of Deep-Sea Benthos (2016, background): “…provides a good estimator of environmental community diversity that has many practical applications for ecosystem assessment and monitoring (Chariton et al., 2010, 2014; Czernik et al., 2013; Stephenson et al., 2013; Lallias et al., 2014; Pawlowski et al., 2014; Willerslev et al., 2014;…”
Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples (2018, methodology): “In another case, primers that target only the V7 region (~140 bp) were used to analyse eukaryote biodiversity in marine sediment (Chariton et al. 2010).”
Environmental DNA - An emerging tool in conservation for monitoring past and present biodiversity (2015, background): “Also, eDNA from estuarine sediments have been used to compare eukaryotic species assemblages to assess human impacts on these ecosystems (Chariton et al., 2010).”
Benchmarking DNA Metabarcoding for Biodiversity-Based Monitoring and Assessment (2016, background): “Several studies have used metabarcoding to characterize the metazoan taxonomic composition of aquatic environments (Porazinska et al., 2009; Chariton et al., 2010; Fonseca et al., 2014; Dell’Anno et al., 2015; Leray and Knowlton, 2015; Chain et al., 2016), and an increasing number of studies have…”