Distribution modelling and statistical phylogeography: an integrative framework for generating and testing alternative biogeographical hypotheses

By C. L. Richards, Bryan C. Carstens, L. Lacey Knowles. 2007

294 citations recorded by the source corpus.

Subfields: Ecological Modeling, Genetics, Paleontology

View Paper: https://www.semanticscholar.org/paper/50f9f8f436c5a115ea5b1a0ab315d3a349a8ddb1

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Citations in the corpus

Integrating ensemble species distribution modelling and statistical phylogeography to inform projections of climate change impacts on species distributions (2013, background): “Phylogeographers have started using SDMs to develop spatially explicit biogeographic hypotheses that can be tested using statistical phylogeographic methods (Richards et al., 2007).”
Phylogenetic Methods in Biogeography (2011, background): “In the most general case, a cost matrix is used to represent the relative ease with which organisms can move between areas in the model (Bremer 1995; Ronquist 1994, 1995a), an approach that is extremely powerful.”
A case for incorporating phylogeography and landscape genetics into species distribution modelling approaches to improve climate adaptation and conservation planning (2010, methodology): “Richards et al. (2007) used this method to assess whether contemporary, isolated ‘sky island’ populations of the flightless montane grasshopper (Melanoplus marshalli) were colonized from proximate refugia as opposed to a single ancestral population (the null hypothesis) (Knowles et al., 2007).”
Drawbacks to palaeodistribution modelling: the case of South American seasonally dry forests (2013, background): “Journal of Biogeography 40, 345–358 ª 2012 Blackwell Publishing Ltd 350 Knowles et al., 2007; Carnaval & Moritz, 2008; Carnaval et al., 2009), as proposed by Richards et al. (2007).”
The diversification of eastern South American open vegetation biomes: Historical biogeography and perspectives (2011, background): “…(potential refugia) can then be identified by combining current and palaeoclimatic models, which can be cross-validated by independent evidence, as geological, palaeoenvironmental (pollen records), and genetic diversity data (Carnaval et al., 2009; Hugall et al., 2002; Richards et al., 2007).”
What do we mean by 'refugia'? (2008, background): “It has recently been argued that palaeoclimatic models can be incorporated with phylogenetic reconstructions to help restrict these reconstructions to those that are likely under given realistic scenarios for past environments (Richards et al., 2007; Knowles et al., 2007).”
Modeling Species and Community Responses to Past, Present, and Future Episodes of Climatic and Ecological Change (2015, background): “The most common use of ENMs in the historical record is in conjunction with phylogeographic analyses to explain current distribution and diversity patterns (Richards et al. 2007) (Figure 1a).”
Effects of the number of presences on reliability and stability of MARS species distribution models: the importance of regional niche variation and ecological heterogeneity (2010, background): “…models have wide relevance in conservation biology (Araújo et al. 2005b; Rissler et al. 2006), biogeography (Lobo et al. 2001; Luoto et al. 2006; Richards et al. 2007), reserves design (Araújo & Williams 2000; Margules & Pressey 2000; OrtegaHuerta & Peterson 2004) and climate change (Iverson…”
Prospects and challenges for parametric models in historical biogeographical inference (2009, methodology): “The most widely used of these is dispersal–vicariance analysis (DIVA; Ronquist, 1997).”
Glacial refugia influence plant diversity patterns in the Mediterranean Basin (2009, background): “Another study combined species distribution and palaeodistribution models in North America, using coalescent simulation and empirical genetic data to generate alternative biogeographical hypotheses (Richards et al., 2007).”
Phylogeography and ecological niche modelling of the New Zealand stick insect Clitarchus hookeri (White) support survival in multiple coastal refugia (2010, methodology): “…these two methods offer independent estimates of the spatial location of glacial refugia (e.g. Hugall et al., 2002; Carstens & Richards, 2007; Richards et al., 2007; Strasburg et al., 2007; Waltari et al., 2007; Dépraz et al., 2008; Cordellier & Pfenninger, 2009; Jakob et al., 2009;…”
The role of molecular genetics in sculpting the future of integrative biogeography (2008, background): “Most recently, these models are beginning to be integrated with georeferenced ecological and morphological information to test alternative spatial models of climate-driven and ecologically deterministic community diversifi cation and distribution (Hugall et al., 2002; Graham et al., 2004; Carstens e”
Species Distribution Models: Ecological Explanation and Prediction Across Space and Time (2009, unknown): “Reviews of SDM literature include those of Guisan & Zimmermann (2000), Stauffer (2002), Guisan & Thuiller (2005), Richards et al. (2007), and Schröder (2008).”
Birth of a biome: insights into the assembly and maintenance of the Australian arid zone biota (2008, methodology): “This model-based phylogeographical hypothesis testing can be carried out in conjunction with explicit ecological and geospatial modelling (Knowles & Carstens 2007; Richards et al. 2007).”
A macroevolutionary mosaic: episodic host‐switching, geographical colonization and diversification in complex host–parasite systems (2008, background): “…biogeography and population genetics to explore coalescent processes as a basis for understanding regional history, the direction and duration of colonizing events, and temporal persistence for assemblages of hosts and parasites (Lessa et al., 2003; Richards et al., 2007; Waltari et al., 2007).”
Predicting the past distribution of species climatic niches. (2009, methodology): “They are beginning to share both theories and methods, and some of their potential routes of integration have recently been discussed ( Richards et al., 2007; Kozak et al., 2008; Swenson, 2008).”