The ade4 package - I : One-table methods

By Daniel Chessel, A. Dufour, Jean Thioulouse. 2004

1,329 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/500230a99a33f61e114c7a0575b71f32990d76db

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Citations in the corpus

The ecodist Package for Dissimilarity-based Analysis of Ecological Data (2007, methodology): “Some of these methods, such as metric and nonmetric multidimensional scaling ordination, are available in base packages or in additional packages such as vegan (Oksanen, Kindt, Legendre, and O’Hara 2006) and ade4 ( Chessel, Dufour, and Thioulouse 2004 ) and have only been included within ecodist for”
MADE4: an R package for multivariate analysis of gene expression data (2005, methodology): “, 2000; Crescenzi and Giuliani, 2001). Fellenberg et al. (2001) described the application of correspondence analysis to study the association between microarray samples and genes in a reduced dimensional space. A group ordination approach was applied successfully to classification and class predicti”
Towards the human intestinal microbiota phylogenetic core. (2009, methodology): “58) and diagram computation with the ade4 statistical package (Chessel et al., 2004).”
A user's guide to functional diversity indices (2010, methodology): “The STATIS analysis and the transformation via the Hill and Smith method and PCoA were computed using the ade4 package (Chessel et al. 2004, Dray et al. 2007).”
Is the originality of a species measurable (2005, methodology): “The data and routines are available in the ade4 package (version >1.3–3) at http://lib.stat.cmu.edu/R/CRAN/ (Chessel et al. 2004).”
DNA Methylation Signatures Identify Biologically Distinct Subtypes in Acute Myeloid Leukemia (2010, methodology): “We used 1-Pearson correlation distance, followed by a Lingoes transformation of the distance matrix to a Euclidean one (Chessel et al., 2004) and subsequent clustering using Ward's method.”
Assembly rules of ectoparasite communities across scales: combining patterns of abiotic factors, host composition, geographic space, phylogeny and traits (2015, methodology): “Th e main analyses were carried out using the package ‘ age4 ’ (Chessel et al. 2004, Dray and Dufour 2007, Dray et al. 2007). An example of the annotated R code is presented in Supplementary material Appendix 8. Detailed R code for the ESLPT analysis can also be found in Pavoine et al. (2011).”
50 Years of Data Science (2017, background): “It was very popular in the early 1990s with ecologists, food scientists, and agronomical engineers (Chessel, Dufour, and Thioulouse 2004).”