Automated matching of high- and low-resolution structural models
By M. Kozin, Dmitri I. Svergun. 2001
1,276 citations recorded by the source corpus.
Subfields: Materials Chemistry
View Paper: https://www.semanticscholar.org/paper/4f1b51c727d18d6c38b16cc0a0c53a2e651dee36
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In Materials Chemistry
- Dmitri I. Svergun
- Alexey G. Kikhney
- M. Petoukhov
- Daniel Franke
- P. Konarev
- H. Mertens
- Cy M. Jeffries
- Jill Trewhella
Citations in the corpus
- ATSAS 2.1, a program package for small‐angle scattering data analysis (2006, positive): “The models with the mean NSD value exceeding twice the dispersion of NSD are considered as outliers and are discarded (Volkov & Svergun, 2003).”
- New developments in the ATSAS program package for small-angle scattering data analysis (2012, positive): “The program SUPCOMB (Kozin & Svergun, 2001) for the alignment of two arbitrary low- or high-resolution models by minimizing the NSD dissimilarity measure has been updated, allowing one to take symmetry into account.”
- Versatile sample environments and automation for biological solution X-ray scattering experiments at the P12 beamline (PETRA III, DESY) (2015, methodology): “A low-resolution ab initio bead model automatically generated by the pipeline using DAMMIF models for initial search and DAMMIN for refinement (Svergun, 1999; Kozin & Svergun, 2001; Volkov & Svergun, 2003; Franke & Svergun, 2009) aligns well with the previously solved crystal structure (Fig.”
- Determination of domain structure of proteins from X-ray solution scattering. (2001, methodology): “Because the DR models had an arbitrary orientation and handedness, they were automatically aligned with the C ␣ coordinates in the crystal structures using the program SUPCOMB (Kozin and Svergun, 2001).”
- Refined solution structure of the 82-kDa enzyme malate synthase G from joint NMR and synchrotron SAXS restraints (2008, methodology): “The individual reconstructions were averaged using DAMAVER (Volkov and Svergun 2003) and superimposed on the X-ray model 1D8C with SUPCOMB (Kozin and Svergun 2001).”
- ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions (2017, methodology): “For the absence of one-to-one correspondence, the normalized spatial discrepancy (NSD) was developed (Kozin & Svergun, 2001).”