Introduction to protein structure

By C. Branden, J. Tooze. 1991

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Citations in the corpus

CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction (2020, background): “P roteins play critical roles in a wide-range of biological processes including catalyzing metabolic reactions, responding to stimuli, and transporting molecules, and these biological activities are largely determined by protein tertiary structures [1].”
End-to-end differentiable learning of protein structure (2018, methodology): “In this work, we introduce the building blocks necessary to construct an end-to-end differentiable model of protein structure, and test whether this approach can be made competitive with co-evolution and template-guided methods using two challenging tasks: (1) the prediction of new protein folds wit”
The structure of the protein universe and genome evolution (2002, background): “In structural biology, a domain is defined as a distinct, compact and stable protein structural unit that folds independently of other such unit”
Fabrication of novel biomaterials through molecular self-assembly (2003, background): “All biomolecules, including peptides and proteins, interact and self-organize to form well-defined structures that are associated with functionalit”
Efficient Unbound Docking of Rigid Molecules (2002, background): “It is well known that antibodies bind to antigens through their hypervariable (HV) regions, also called complementaritydetermining regions (CDRs) [1].”
Web-based visualisation and analysis of 3D electron-microscopy data from EMDB and PDB (2013, background): “Side chains are usually poorly resolved at resolutions worse than 4 Å (Branden and Tooze, 1991), although density averaging of multiple copies of a molecule or assembly can be used to improve the signal-to-noise ratio and thereby improve the definition of side-chain details.”
On the Probabilistic Foundations of Probabilistic Roadmap Planning (2006, background): “Another problem, protein folding, takes us beyond robotics to study the motion of bio-molecules [5].”
Directed evolution of new catalytic activity using the α/β-barrel scaffold (2000, background): “They provide a wide spectrum of catalytic functions involving several different types of reactio”