Theory of sequence-dependent DNA elasticity

By Bernard D. Coleman, Wilma K. Olson, David Swigon. 2003

118 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/455eb2f3e5f7dd19aecc7c649e476e871737a544

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In Molecular Biology

1. Catherine L. Lawson
2. Helen M. Berman
3. David Swigon
4. R. Ebright
5. S. Darst
6. S. Parasuraman
7. G. Sheldrick
8. Torsten Schwede

Citations in the corpus

• Catabolite activator protein: DNA binding and transcription activation. (2004, methodology): “interactions [41,56], AR3‐sR4 interactions [58‐60], and noninterpenetration as constraints, and using sequencedependent DNA deformation energies [ 50 ] as restraints; and (iii) modeling downstream DNA segments as in published models of the RNAP‐promoter open complex [39,51�� ]. In step (ii), to sati”
• Structure and interactions of biological helices (2007, background): “The corresponding discrete models of DNA as elastically connected basepair stacks see, e.g., Bolshoy et al. 1991 , Olson et al. 1993 , Coleman et al. 2003 , and references therein as well as continuous models with sequence-dependent intrinsic twist, curvatures, and local elastic constants see,…”