Cytoscape: software for visualization and analysis of biological networks.

By M. Kohl, S. Wiese, B. Warscheid. Methods in molecular biology, 2011

1,346 citations recorded by the source corpus.

Subfields: Computer Vision and Pattern Recognition, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/422314e366020287daf2b7765750b94eecd7c0bb

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

1. David A. Lee
2. Inanç Birol
3. Christine A. Orengo
4. Marco A. Marra
5. Steven J. M. Jones
6. Ian Sillitoe
7. Martin Krzywinski
8. Mohammed Alquraishi

Citations in the corpus

• Hive plots - rational approach to visualizing networks (2012, methodology): “coli generated with Cytoscape [39] using yFiles Sugyiama (left) and spring embedded layouts (right).”
• CATH: an expanded resource to predict protein function through structure and sequence (2016, methodology): “Visualisation of functional and structural diversity in the HUP superfamily using Cytoscape (25).”
• A new genome-mining tool redefines the lasso peptide biosynthetic landscape (2016, methodology): “Nodes were annotated using RODEO output (via Microsoft Excel) and the NCBI Taxonomy database 53 .”
• Prediction of Drug Combinations by Integrating Molecular and Pharmacological Data (2011, neutral): “The networks were visualized with Cytoscape [35].”