miRDB: a microRNA target prediction and functional annotation database with a wiki interface.
By Xiaowei Wang. RNA: A publication of the RNA Society, 2008
747 citations recorded by the source corpus.
Subfields: Cancer Research, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/4032cb28f726f41a9c93abfa434d0d7eee3a3850
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Cancer Research
- Jin-Wu Nam
- David P. Bartel
- Yuhao Chen
- Murray J. Cairns
- Jiuyong Li
- Bing Liu
- Vikram Agarwal
- Xiaowei Wang
In Molecular Biology
- Jin-Wu Nam
- David P. Bartel
- Yuhao Chen
- Murray J. Cairns
- Jiuyong Li
- Bing Liu
- Vikram Agarwal
- Xiaowei Wang
Citations in the corpus
- Predicting effective microRNA target sites in mammalian mRNAs (2015, background): “As reported recently ( Wang, 2014 ), the slight up-regulation observed for mRNAs with CLASH-identified non-canonical interactions in the original dataset was not reproducible in the second dataset ( Figure 1E ).”
- Identifying miRNAs, targets and functions (2012, methodology): “org/miRDB/ [64] miRoØ miRanda, PITA and TargetScan Yes NCBI Gene Database, NCBI Nucleotide Database, GO,GAD http://ferrolab.”
- Supplemental Information Supplemental Data (2014, neutral): “miRNA prediction databases The following miRNA target prediction databases were used: MIRDB release 14 (Wang, 2008; Wang and El Naqa, 2008), Targetscan 5.1 (Friedman et al, 2009), MICROCOSM v5 (Griffiths-Jones et al, 2008), DIANA 3.0 (Maragkakis et al, 2009a; Maragkakis et al, 2009b), RNA22 (august…”
- The multiMiR R package and database: integration of microRNA–target interactions along with their disease and drug associations (2014, background): “Complementing experimental data, a large number of computational meth-ods have been developed to predict potential miRNA targets (6–13).”
- Common features of microRNA target prediction tools (2014, methodology): “SVMicrO uses these features to predict candidate miRNA:mRNA target pairs.”
- miRDB: an online database for prediction of functional microRNA targets (2019, methodology): “To facilitate the process of candidate target selection, we have previously developed an on-line database, miRDB, for miRNA target prediction and functional annotations (7,8).”