Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

By H. Lam, Xun Xu, Xin Liu, Wenbin Chen, Guohua Yang, F. Wong, Man-Wah Li, Weiming He, Nan Qin, Jun Li and 6 more. Nature Genetics, 2010

848 citations recorded by the source corpus.

Subfields: Plant Science

View Paper: https://www.semanticscholar.org/paper/376d4006db5071d2cce65e659e460ff333aa414f

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Plant Science

1. R. Saxena
2. M. Blair
3. Nigel Maxted
4. Bin Han
5. Tae-Ho Lee
6. J. Berger
7. Changsoo Kim
8. Rajeev K. Varshney

Citations in the corpus

• SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data (2014, methodology): “As a demonstration of the use of SNPhylo, we determined a tree (Figure 2A) with published SNP data that includes 6,289,747 SNP loci determined by resequencing of 31 soybean wild types and cultivars [7].”
• Genome sequence of the cultivated cotton Gossypium arboreum (2014, positive): “The SNP calling process was carried out using the SOAP2+SOAPsnp pipeline 39 .”
• Legume Crops Phylogeny and Genetic Diversity for Science and Breeding (2015, methodology): “Using the genome of Williams 82 as a reference, a wide range of nucleotide and structural variations between wild and domesticated soybean have been catalogued (Kim et al., 2010; Lam et al., 2010; Li et al., 2013b).”
• Natural variations and genome-wide association studies in crop plants. (2014, methodology): “Owing to significant decreases in sequencing cost, this strategy has been successfully applied in several crops (34, 39, 43, 60, 123, 127).”
• The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution (2013, neutral): “5 (91) ‘Peach’ x ‘Ferganensis’ (P x F) 21 1321 (48) 207.”
• Single-Cell Exome Sequencing Reveals Single-Nucleotide Mutation Characteristics of a Kidney Tumor (2012, methodology): “Principle component analysis (PCA) was performed as in the previous population genetic study (Lam et al., 2010; Xia et al., 2009) based on the sites of somatic mutation that we called in 20 cancer cells.”