Maize HapMap2 identifies extant variation from a genome in flux

By Jer-Ming Chia, Chi Song, Peter J. Bradbury, D. Costich, Natalia de Leon, John Doebley, Robert Elshire, Brandon S. Gaut, Laura Geller, Jeffrey Glaubitz and 28 more. Nature Genetics, 2012

594 citations recorded by the source corpus.

Subfields: Genetics, Plant Science

View Paper: https://www.semanticscholar.org/paper/31b9fb6db10f69d4335d56f07ba58b72431765c6

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Citations in the corpus

Transposable elements contribute to activation of maize genes in response to abiotic stress (2014, methodology): “M, and Oh43 -”
1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana (2016, result): “Similar efforts have led to large-scale surveys of sequence diversity in other plants, mostly crops (Chia et al., 2012; Huang et al., 2012; Lin et al., 2014; 100 Tomato Genome Sequencing Consortium, 2014; 3000 Rice Genomes Project, 2014; Zhou et al., 2015).”
Natural variations and genome-wide association studies in crop plants. (2014, background): “Resequencing a large number of diverse varieties, facilitated by second-generation sequencing technologies and new computational biological approaches, is feasible after the release of a crop’s reference genome, which is then used to characterize genome-wide variation for genetic mapping and evoluti”
Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol (2013, methodology): “Second, we aligned the non-B73 tags of these SNPs to the B97 whole genome shotgun sequences from maize HapMap2 data [24], which were sequenced at 4.”
Comprehending crystalline β-carotene accumulation by comparing engineered cell models and the natural carotenoid-rich system of citrus (2011, unknown): “Maize is renowned for both its high level of single nucleotide polymorphisms within coding regions (Gore et al., 2009; Chia et al., 2012) and a substantial frequency of presence/absence variations (Messing and Dooner, 2006; Springer et al.”
Genotyping‐by‐Sequencing for Plant Breeding and Genetics (2012, background): “…in Arabidopsis thaliana (L.) Heynh., rice (Oryza sativa L.), and maize (Zea mays L.) (Huang et al., 2009; Ashelford et al., 2011; Gan et al., 2011; Chia et al., 2012; Jiao et al., 2012; Xu et al., 2012), although it quickly becomes less manageable with larger, more complex genomes that lack a…”
Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array (2014, background): “The latter type of variation was shown can contribute to phenotype (Chia et al., 2012; Springer et al., 2009), and the resources developed here will provide an opportunity to investigate the impact of PAVs on trait variation in wheat.”