Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.)

By M. Tenaillon, M. Sawkins, Anthony D. Long, R. Gaut, John Doebley, Brandon S. Gaut. Proceedings of the National Academy of Sciences of the United States of America, 2001

694 citations recorded by the source corpus.

Subfields: Genetics, Plant Science

View Paper: https://www.semanticscholar.org/paper/2fd7c4d1930d8eebc1f4782b2f14086171f83627

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Citations in the corpus

Genetic diversity, linkage disequilibrium, and association mapping analyses of peach (Prunus persica) landraces in China (2012, result): “However, our estimate of genome-wide averages for LD extent inferred by the SSR markers in peach was larger than those inferred by the single nucleotide polymorphism reported in Arabidopsis (25–250 kb; Nordborg et al. 2002) and maize (200– 400 bp; Tenaillon et al. 2001).”
Novel genetic mapping tools in plants: SNPs and LD-based approaches (2002, background): “Recent results in maize suggest that there is little LD in broad based populations [27, 28 ].”
Genome diversity and gene haplotypes in the grapevine (Vitis vinifera L.), as revealed by single nucleotide polymorphisms (2004, background): “SNP analysis in barley Kanazin et al. 2002 , maize Tenaillon et al. 2001 , soybean Zhu et al. 2003 and sugar beet Schneider et al. 2001 reveals the frequent occurrence of SNPs and the existence of intragene haplotypes.”
Conserving and Enhancing Maize Genetic Resources as Global Public Goods- A Perspective from CIMMYT (2010, background): “Single nucleotide polymorphisms are the most abundant sequence variations in maize (Tenaillon et al., 2001) and are ideally suited to the generation of high density genetic maps (Cho et al., 1999).”
Molecular marker-assisted breeding options for maize improvement in Asia (2010, background): “Compared with the genomes of other cultivated plant species, SNP frequency in maize is high, with one SNP being found every 28–124 bp (Tenaillon et al. 2001; Ching et al. 2002; Vroh Bi et al. 2006).”
Maize association population: a high-resolution platform for quantitative trait locus dissection. (2005, background): “This new association population has the potential to identify QTL with small effects, which will aid in dissecting complex traits and in planning future projects to exploit the rich diversity present in maize.”
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species (2011, background): “Many species including maize [4,5], Drosophila [6], and some bacteria [7], however, are at least 10 times more diverse than humans (more than one substitution per hundred nucleotides).”
Genetic Diversity, Population Structure, and Linkage Disequilibrium in U.S. Elite Winter Wheat (2010, background): “…us, the estimated LD of wheat (0.5–50 cM) (Breseghello and Sorrells, 2006; Maccaferri et al., 2006; Chao et al., 2007; Somers et al., 2007) is relatively high compared with that of maize (200–2000 bp) (Tenaillon et al., 2001) and Arabidopsis (less than 10 kb) (Kim et al., 2007; Song et al., 2009).”
Genetic structure and domestication history of the grape (2011, background): “Although we are unable to provide precise estimates of the severity of the grape domestication bottleneck with the current dataset, it is evident that LD, as measured by r(2) between SNPs, decays rapidly in vinifera, far more quickly than in humans (27), Arabidopsis (28), rice (29), and maize (30, 3”
Applications of Linkage Disequilibrium and Association Mapping in Crop Plants (2007, neutral): “The population sample effect is clearly observed in maize, where LD decays within 1kb in land races (Tenaillon et al. 2001), in approximately 2 kb in diverse inbred lines (Remington et al.”
The genetic dissection of quantitative traits in crops (2010, background): “In maize, r2 decays within 0.3-2 kb, and this rapid decay may be due to its outcrossing mating system (Remington et al. 2001; Tenaillon et al. 2001).”