Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.)

By Yong-Gu Cho, T. Ishii, S. Temnykh, X. Chen, L. Lipovich, Susan McCouch, W. Park, N. Ayres, S. Cartinhour. Theoretical and Applied Genetics, 2000

568 citations recorded by the source corpus.

Subfields: Genetics, Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/2f5bd6c7dab67e9853e10052ffb5b1a4e1580e62

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Citations in the corpus

Microsatellite Markers in Plants and Insects. Part I: Applications of Biotechnology (2009, background): “Several papers reported that the level of polymorphism was higher from genomic SSR markers than from genic SSR markers (Cho et al. 2000; Eujayl et al. 2001; Gupta et al. 2003).”
Methods for Development of Microsatellite Markers: An Overview (2014, unknown): “Moreover, EST-SSR markers exhibit less polymorphism and are less efficient in distinguishing closely related individuals (Cho et al., 2000; Gupta et al., 2003; Chabane et al., 2005) because of greater DNA sequence conservation in transcribed or coding regions (Rungis et al., 2004; Varshney et al.,…”
Microsatellites and microsynteny in the chloroplast genomes of Oryza and eight other Gramineae species (2000, background): “These cultivars were simultaneously used for nuclear microsatellite analysis ( Cho et al. 2000 ) and are the mapping parents used in rice genome analysis in China, Korea, Philippines, Japan and the United States.”
MOLECULAR BIOLOGY AND PHYSIOLOGY EST-SSR: A New Class of Genetic Markers in Cotton (2004, background): “There are some studies in which SSRs were derived from public databases for use in plants, for example in rice (Cho et al., 2000), and grape (Scott et al.”
Population structure and breeding patterns of 145 U.S. rice cultivars based on SSR marker analysis (2005, background): “…provides much greater resolution than other types seven percent of U.S. rice cultivars were developed from intragroup of markers because of the high level of polymorphism crosses, indicating the availability of substantial genetic variability at SSR loci (Cho et al., 2000; Akkaya et al., 1992).”
EST-derived SSR markers in Jatropha curcas L.: development, characterization, polymorphism, and transferability across the species/genera (2011, methodology): “The EST-based markers have been successfully used in several species, such as barley (Thiel et al. 2003; Chabane et al. 2005), wheat (Zhang et al. 2005), rice ( Cho et al. 2000; Varshney et al. 2005b), sugarcane (Cordeiro et al. 2001), grape (Scott et al. 2000), coffee (Aggarwal et al. 2007), peanu”
EST versus Genomic Derived Microsatellite Markers for Genotyping Wild and Cultivated Barley (2005, background): “ESTs are a major resource in the analysis of gene expression in Arabidopsis (Delseny et al. 1997), and crops such as grape (Ablett et al. 2000) and rice (Cho et al. 2000).”
Assessment of Genetic Diversity of Philippine Rice Cultivars Carrying Good Quality Traits using SSR Markers (2007, background): “On a per locus basis, these numbers were much higher than the average of 2.0–5.5 alleles per locus for various classes of microsatellites reported by Cho et al. (2000) and were comparable to the average of 6.3 alleles per locus (range 2 to 11) reported by Yu et al. (2003), using different parental…”
Importance of Genetic Diversity Assessment in Crop Plants and Its Recent Advances: An Overview of Its Analytical Perspectives (2015, background): “Gene banks need to include different characteristics in their screening processes and their collections need to be comprehensive, including what are now considered minor crops, and that may come with huge impact on food baskets.”
Genetic linkage maps of rose constructed with new microsatellite markers and locating QTL controlling flowering traits (2007, result): “Similar results have been found in other plants (Blair et al. 2003; Cho et al. 2000; Schloss et al. 2002), as EST sequences are generally more conserved than genomic sequences.”
Integrating marker assisted background analysis with foreground selection for identification of superior bacterial blight resistant recombinants in Basmati rice (2008, unknown): “was obtained from Cho et al. (2000), McCouch et al.”
Genic Molecular Markers in Plants: Development and Applications (2007, background): “Rice (Oryza sativa) EST-SSR wild species of rice Cho et al. 2000 Sugarcane (Saccharaum officinarum) EST-SSR Saccharum robustum,”
Association mapping of yield and its components in rice cultivars (2007, background): “Use of SSR markers to interpret population structure results in much greater resolution than use of other types of marker, because of the high level of polymorphism at SSR loci (Akkaya et al. 1992; Cho et al. 2000 ).”