Enzyme-specific profiles for genome annotation: PRIAM.
By C. Claudel-Renard, C. Chevalet, Thomas Faraut, Daniel Kahn. Nucleic Acids Research, 2003
362 citations recorded by the source corpus.
Subfields: Molecular Biology, Plant Science
View Paper: https://www.semanticscholar.org/paper/2d747aa589d799472e9a32821163d33950c1b42d
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Molecular Biology
- H. Smidt
- Patrik D'haeseleer
- Blake A. Simmons
- V. Schachter
- Philip Hugenholtz
- Pierre-Yves Bourguignon
- Steven W. Singer
- J. Gerritsen
In Plant Science
Citations in the corpus
- P2CS: a two-component system resource for prokaryotic signal transduction research (2009, methodology): “To circumvent this problem, we manually compiled a list of enzyme activities (Table 1) that we determined as being potentially present in TCS proteins, from the ENZYME database [13] and compared our dataset to this list.”
- Strategies for Enhancing the Effectiveness of Metagenomic-based Enzyme Discovery in Lignocellulolytic Microbial Communities (2010, methodology): “Acetoacetyl-CoA reductase 3-hydroxybutyryl-CoA dehydrogenase 3-hydroxybutyryl-CoA dehydratase Enoyl-CoA hydratase Butyryl-CoA dehydrogenase Trans-2-enoyl-CoA reductase (NAD+) Acetaldehyde dehydrogenase (acetylating) Butanal dehydrogenase Butanol dehydrogenase Dimethylallyltransferase Geranyltranstra”
- Genome-scale models of bacterial metabolism: reconstruction and applications (2008, methodology): “We will then review the techniques commonly used to assess the consistency of reconstructed models, and show how missing biochemical activities can be identified to complete the model.”
- MaGe: a microbial genome annotation system supported by synteny results (2006, methodology): “In addition, genes coding for enzymes are classified using the PRIAM software (30), the results of which are used for metabolic pathway reconstruction (see below).”
- A comparative and functional genomics analysis of the genus Romboutsia provides insight into adaptation to an intestinal lifestyle (2019, methodology): “Subsequently the annotation was further 138 enhanced by adding EC numbers via PRIAM version March 06, 2013 (41).”
- Probiotics modulated gut microbiota suppresses hepatocellular carcinoma growth in mice (2016, methodology): “The EC number for each enzyme was estimated using PRIAM (63) with the default parameters.”